Executive Summary

Maternal Preconception Study

Resident Intruder Behaviours

Introduction

The results of the analysis are presented using the following structure:

1. Searchable High‑Level Summary: Provides a brief overview of the key findings from our analysis with a table of effects
2. Visualisation, Descriptive Statistics and Diagnostics by Variable: Exploratory data analysis and model diagnostics for each behavioral measure
3. Searchable ROPE Analysis Table: Model diagnostics to check the fit of the models

Effects of Interest

Searchable High‑Level Summary

Enter search terms in the column headers to filter the table below

Note: TD in the Higher column indicates a Trend Difference for the continuous variable.

Visualisation, Descriptive Statistics and Diagnostics by Variable

---

Aggression

Aggressive Behaviors

Plots

Bar Plot

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$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

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\(labels\)labels$x [1] “Aggressive Behaviors (n)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Summary Statistics

Aggressive Behaviors by Grouping Variables
Summary Statistics with Covariate Descriptives
Diet	N	Mean	SD	Min	Max	Prop Zero (%)	Warning	Body Weight Ratio		Separation Time
								Mean	SD	Mean	SD
Control	14	4.11	5.54	0.00	18.00	14.29	!	69.82	3.54	134.07	39.83
CR25	13	6.19	14.87	0.00	54.00	53.85	*	67.29	2.28	158.08	44.55
CRA	13	2.19	3.42	0.00	13.00	23.08	!	69.72	3.90	156.69	45.66
CRV	13	4.58	9.96	0.00	35.50	46.15	*	68.07	4.48	188.38	48.07

Diagnostics

Summary Table

Model Summary
Family: lognormal
Parameter	Estimate	Std. Error	2.5% CI	97.5% CI	Type
Fixed Effects
Intercept	−25.209	11.820	−48.900	−2.341	Fixed Effects
DietCR25	−0.443	0.821	−2.040	1.156	Fixed Effects
DietCRA	0.083	0.810	−1.485	1.668	Fixed Effects
DietCRV	−0.132	0.822	−1.752	1.486	Fixed Effects
BW_Ratio	0.392	0.165	0.075	0.722	Fixed Effects
Separation	−0.021	0.013	−0.048	0.004	Fixed Effects

Posterior Check

$data # A tibble: 385 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 0.00112 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 0.0566 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 20.8
4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 0.00150 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 35.1
6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 2.14
7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 0.0697 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 1.36
9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 2.14
10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 42.3
# ℹ 375 more rows

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$guides <Guides[0] ggproto object>

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\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

ROPE Analysis

Categorical

Main Effect

Effect	Median	[95% HDI]	Direction Prob.	ROPE %
Diet: Control vs CR25
Diet: Control vs CR25	0.43	[-1.09, 2.02]	70.10	8.95
Diet: Control vs CRA
Diet: Control vs CRA	-0.05	[-1.51, 1.57]	52.45	13.80
Diet: Control vs CRV
Diet: Control vs CRV	0.13	[-1.49, 1.79]	55.85	12.30
Diet: CR25 vs CRA
Diet: CR25 vs CRA	-0.51	[-2.74, 1.41]	68.00	8.65
Diet: CR25 vs CRV
Diet: CR25 vs CRV	-0.31	[-2.30, 1.92]	61.80	9.75
Diet: CRA vs CRV
Diet: CRA vs CRV	0.19	[-1.98, 2.23]	56.40	8.70

Continuous

No continuous ROPE effects available.

Bites

Plots

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

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\(theme\)line $colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

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$arrow [1] FALSE

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Density Plot

$data # A tibble: 53 × 8 Separation X2 ID Diet BW_Ratio value group_interaction color

1 91 1.3 370 Control 66.2 16.5 Control #2E2E2E 2 91 2.3 400 Control 62.9 0 Control #2E2E2E 3 112 5.3 408 Control 72.3 2 Control #2E2E2E 4 153 3.3 488 Control 72.6 0 Control #2E2E2E 5 153 4.3 496 Control 64.1 0 Control #2E2E2E 6 111 6.3 512 Control 69.5 0 Control #2E2E2E 7 105 28.3 568 Control 74.9 0 Control #2E2E2E 8 210 25.3 623 Control 68.0 0 Control #2E2E2E 9 210 26.3 631 Control 70.1 5 Control #2E2E2E 10 156 29.3 639 Control 70.9 0 Control #2E2E2E # ℹ 43 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

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$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

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\(labels\)labels$x [1] “Bites (n)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Summary Statistics

Bites by Grouping Variables
Summary Statistics with Covariate Descriptives
Diet	N	Mean	SD	Min	Max	Prop Zero (%)	Warning	Body Weight Ratio		Separation Time
								Mean	SD	Mean	SD
Control	14	2.71	5.25	0.00	16.50	64.29	*	69.82	3.54	134.07	39.83
CR25	13	4.04	11.74	0.00	42.50	69.23	*	67.29	2.28	158.08	44.55
CRA	13	0.27	0.60	0.00	2.00	76.92	*	69.72	3.90	156.69	45.66
CRV	13	2.85	6.63	0.00	22.50	61.54	*	68.07	4.48	188.38	48.07

Diagnostics

Summary Table

Model Summary
Family: bernoulli
Parameter	Estimate	Std. Error	2.5% CI	97.5% CI	Type
Fixed Effects
Intercept	−7.161	6.622	−20.373	5.515	Fixed Effects
DietCR25	0.053	0.635	−1.208	1.282	Fixed Effects
DietCRA	−0.430	0.637	−1.690	0.813	Fixed Effects
DietCRV	0.284	0.647	−0.977	1.536	Fixed Effects
BW_Ratio	0.096	0.091	−0.079	0.278	Fixed Effects
Separation	−0.001	0.007	−0.015	0.013	Fixed Effects

Posterior Check

$data # A tibble: 583 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 1 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 1 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 0 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 0 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 0 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 0 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 1 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 1 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 1 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 0 # ℹ 573 more rows

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$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

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$guides <Guides[0] ggproto object>

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\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

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\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

ROPE Analysis

Categorical

Main Effect

Effect	Median	[95% HDI]	Direction Prob.	ROPE %
Diet: Control vs CR25
Diet: Control vs CR25	-0.05	[-1.35, 1.12]	53.05	22.80
Diet: Control vs CRA
Diet: Control vs CRA	0.41	[-0.84, 1.62]	75.00	17.55
Diet: Control vs CRV
Diet: Control vs CRV	-0.30	[-1.55, 1.00]	68.15	19.60
Diet: CR25 vs CRA
Diet: CR25 vs CRA	0.46	[-1.12, 1.95]	73.35	15.30
Diet: CR25 vs CRV
Diet: CR25 vs CRV	-0.23	[-1.78, 1.22]	61.60	19.20
Diet: CRA vs CRV
Diet: CRA vs CRV	-0.71	[-2.25, 0.72]	82.65	13.50

Continuous

No continuous ROPE effects available.

Clinchs

Plots

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

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Density Plot

$data # A tibble: 53 × 8 Separation X2 ID Diet BW_Ratio value group_interaction color

1 91 1.3 370 Control 66.2 0 Control #2E2E2E 2 91 2.3 400 Control 62.9 0 Control #2E2E2E 3 112 5.3 408 Control 72.3 0 Control #2E2E2E 4 153 3.3 488 Control 72.6 0 Control #2E2E2E 5 153 4.3 496 Control 64.1 0 Control #2E2E2E 6 111 6.3 512 Control 69.5 0 Control #2E2E2E 7 105 28.3 568 Control 74.9 0 Control #2E2E2E 8 210 25.3 623 Control 68.0 0 Control #2E2E2E 9 210 26.3 631 Control 70.1 0 Control #2E2E2E 10 156 29.3 639 Control 70.9 0 Control #2E2E2E # ℹ 43 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

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$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^value env: 0x000002ce6f240ba0

$y expr: ^group_interaction env: 0x000002ce6f240ba0

$fill expr: ^group_interaction env: 0x000002ce6f240ba0

attr(,“class”) [1] “uneval”

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\(labels\)labels$x [1] “Clinchs (n)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Summary Statistics

Clinchs by Grouping Variables
Summary Statistics with Covariate Descriptives
Diet	N	Mean	SD	Min	Max	Prop Zero (%)	Warning	Body Weight Ratio		Separation Time
								Mean	SD	Mean	SD
Control	14	0.00	0.00	0.00	0.00	100.00	*	69.82	3.54	134.07	39.83
CR25	13	0.00	0.00	0.00	0.00	100.00	*	67.29	2.28	158.08	44.55
CRA	13	0.54	1.94	0.00	7.00	92.31	*	69.72	3.90	156.69	45.66
CRV	13	0.08	0.28	0.00	1.00	92.31	*	68.07	4.48	188.38	48.07

Diagnostics

Summary Table

Model Summary
Family: bernoulli
Parameter	Estimate	Std. Error	2.5% CI	97.5% CI	Type
Fixed Effects
Intercept	−63.242	29.930	−133.466	−16.406	Fixed Effects
DietCR25	−0.019	0.965	−1.907	1.885	Fixed Effects
DietCRA	0.316	0.892	−1.434	2.090	Fixed Effects
DietCRV	−0.122	0.905	−1.896	1.654	Fixed Effects
BW_Ratio	0.676	0.329	0.137	1.429	Fixed Effects
Separation	0.062	0.040	−0.001	0.158	Fixed Effects

Posterior Check

$data # A tibble: 583 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 0 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 0 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 0 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 0 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 0 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 0 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 0 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 0 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 0 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 0 # ℹ 573 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

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\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

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Convergence

ROPE Analysis

Categorical

Main Effect

Effect	Median	[95% HDI]	Direction Prob.	ROPE %
Diet: Control vs CR25
Diet: Control vs CR25	0.04	[-1.79, 1.95]	51.80	14.6
Diet: Control vs CRA
Diet: Control vs CRA	-0.30	[-1.96, 1.56]	63.90	15.0
Diet: Control vs CRV
Diet: Control vs CRV	0.11	[-1.78, 1.79]	54.50	16.0
Diet: CR25 vs CRA
Diet: CR25 vs CRA	-0.32	[-2.95, 2.11]	59.75	11.4
Diet: CR25 vs CRV
Diet: CR25 vs CRV	0.09	[-2.51, 2.63]	53.20	10.0
Diet: CRA vs CRV
Diet: CRA vs CRV	0.41	[-1.83, 2.63]	64.05	11.3

Continuous

No continuous ROPE effects available.

Lateral Behaviors

Plots

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

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$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

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Summary Statistics

Lateral Behaviors by Grouping Variables
Summary Statistics with Covariate Descriptives
Diet	N	Mean	SD	Min	Max	Prop Zero (%)	Warning	Body Weight Ratio		Separation Time
								Mean	SD	Mean	SD
Control	14	0.43	0.65	0.00	2.00	57.14	*	69.82	3.54	134.07	39.83
CR25	13	1.15	3.02	0.00	11.00	61.54	*	67.29	2.28	158.08	44.55
CRA	13	0.19	0.43	0.00	1.50	76.92	*	69.72	3.90	156.69	45.66
CRV	13	0.38	0.94	0.00	2.50	84.62	*	68.07	4.48	188.38	48.07

Diagnostics

Summary Table

Model Summary
Family: bernoulli
Parameter	Estimate	Std. Error	2.5% CI	97.5% CI	Type
Fixed Effects
Intercept	−13.473	7.292	−28.480	0.058	Fixed Effects
DietCR25	0.359	0.637	−0.895	1.596	Fixed Effects
DietCRA	−0.540	0.637	−1.811	0.696	Fixed Effects
DietCRV	−0.848	0.693	−2.220	0.486	Fixed Effects
BW_Ratio	0.171	0.099	−0.016	0.375	Fixed Effects
Separation	0.006	0.008	−0.009	0.022	Fixed Effects

Posterior Check

$data # A tibble: 583 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 0 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 1 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 0 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 0 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 0 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 1 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 0 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 0 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 0 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 1 # ℹ 573 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

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Convergence

ROPE Analysis

Categorical

Main Effect

Effect	Median	[95% HDI]	Direction Prob.	ROPE %
Diet: Control vs CR25
Diet: Control vs CR25	-0.37	[-1.64, 0.81]	71.15	18.55
Diet: Control vs CRA
Diet: Control vs CRA	0.53	[-0.60, 1.83]	81.05	16.25
Diet: Control vs CRV
Diet: Control vs CRV	0.81	[-0.42, 2.20]	89.25	11.10
Diet: CR25 vs CRA
Diet: CR25 vs CRA	0.92	[-0.67, 2.49]	88.65	9.00
Diet: CR25 vs CRV
Diet: CR25 vs CRV	1.20	[-0.38, 2.72]	93.50	5.45
Diet: CRA vs CRV
Diet: CRA vs CRV	0.29	[-1.29, 1.83]	63.55	15.95

Continuous

No continuous ROPE effects available.

Fighting

Plots

Bar Plot

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$hjust NULL

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$margin NULL

$debug NULL

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attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

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$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

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$legend.justification [1] “center”

$legend.justification.top NULL

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$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 14points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

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$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

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attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

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$linetype NULL

$lineend NULL

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\(plot.title\)family NULL

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\(plot.subtitle\)family NULL

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$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

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$debug NULL

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$strip.background.x NULL

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$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

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$lineheight NULL

$margin [1] 5.6points 5.6points 5.6points 5.6points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

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\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

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$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

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attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 3.5points

$strip.switch.pad.wrap [1] 3.5points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce6a3532a8>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Fighting (n)”

\(labels\)y [1] “”

\(labels\)colour [1] “group_interaction”

\(labels\)fill [1] “group_interaction”

\(labels\)group [1] “y_group”

\(labels\)label [1] “label_text”

attr(,“class”) [1] “gg” “ggplot”

Density Plot

$data # A tibble: 53 × 8 Separation X2 ID Diet BW_Ratio value group_interaction color

1 91 1.3 370 Control 66.2 1.5 Control #2E2E2E 2 91 2.3 400 Control 62.9 0 Control #2E2E2E 3 112 5.3 408 Control 72.3 0 Control #2E2E2E 4 153 3.3 488 Control 72.6 0.5 Control #2E2E2E 5 153 4.3 496 Control 64.1 0.5 Control #2E2E2E 6 111 6.3 512 Control 69.5 0 Control #2E2E2E 7 105 28.3 568 Control 74.9 2 Control #2E2E2E 8 210 25.3 623 Control 68.0 1.5 Control #2E2E2E 9 210 26.3 631 Control 70.1 3 Control #2E2E2E 10 156 29.3 639 Control 70.9 0.5 Control #2E2E2E # ℹ 43 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^value env: 0x000002ce6fd351f8

$y expr: ^group_interaction env: 0x000002ce6fd351f8

$fill expr: ^group_interaction env: 0x000002ce6fd351f8

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

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$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

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$margin [1] 0points 0points 2.75points 0points

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attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

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$margin [1] 0points 2.75points 0points 0points

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

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$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

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\(axis.text.x.top\)family NULL

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$margin [1] 0points 0points 2.2points 0points

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attr(,“class”) [1] “element_text” “element”

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\(axis.text.r\)family NULL

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$margin [1] 0points 2.2points 0points 2.2points

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attr(,“class”) [1] “element_text” “element”

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$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

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$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

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$axis.minor.ticks.length.y NULL

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$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

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$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

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\(legend.text\)family NULL

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

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$size NULL

$hjust [1] 0

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$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

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attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.minor.x NULL

$panel.grid.minor.y list() attr(,“class”) [1] “element_blank” “element”

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

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$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

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$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

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\(strip.text.y\)family NULL

$face NULL

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$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: TRUE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce6fd351f8>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Fighting (n)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Summary Statistics

Fighting by Grouping Variables
Summary Statistics with Covariate Descriptives
Diet	N	Mean	SD	Min	Max	Prop Zero (%)	Warning	Body Weight Ratio		Separation Time
								Mean	SD	Mean	SD
Control	14	0.96	0.93	0.00	3.00	28.57	!	69.82	3.54	134.07	39.83
CR25	13	1.00	2.21	0.00	8.00	61.54	*	67.29	2.28	158.08	44.55
CRA	13	1.19	1.20	0.00	4.50	23.08	!	69.72	3.90	156.69	45.66
CRV	13	1.27	2.84	0.00	9.50	69.23	*	68.07	4.48	188.38	48.07

Diagnostics

Summary Table

Model Summary
Family: lognormal
Parameter	Estimate	Std. Error	2.5% CI	97.5% CI	Type
Fixed Effects
Intercept	−22.376	12.746	−48.469	1.861	Fixed Effects
DietCR25	−0.408	0.826	−2.019	1.229	Fixed Effects
DietCRA	0.619	0.815	−0.972	2.216	Fixed Effects
DietCRV	−0.548	0.853	−2.215	1.124	Fixed Effects
BW_Ratio	0.338	0.178	0.002	0.706	Fixed Effects
Separation	−0.025	0.014	−0.055	0.001	Fixed Effects

Posterior Check

$data # A tibble: 319 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 1.82
2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 13.4
3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 0.00319
4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 1.36
5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 366.
6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 48.2
7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 0.00131
8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 0.00000572 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 236.
10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 0.00282
# ℹ 309 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

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attr(,“class”) [1] “element_text” “element”

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attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

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$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ced5d4b5b8>

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\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

ROPE Analysis

Categorical

Main Effect

Effect	Median	[95% HDI]	Direction Prob.	ROPE %
Diet: Control vs CR25
Diet: Control vs CR25	0.41	[-1.19, 1.93]	69.90	7.45
Diet: Control vs CRA
Diet: Control vs CRA	-0.59	[-2.09, 0.91]	77.80	7.35
Diet: Control vs CRV
Diet: Control vs CRV	0.57	[-0.93, 2.29]	73.75	6.45
Diet: CR25 vs CRA
Diet: CR25 vs CRA	-1.03	[-2.90, 1.19]	83.25	3.70
Diet: CR25 vs CRV
Diet: CR25 vs CRV	0.17	[-1.93, 2.48]	55.20	6.10
Diet: CRA vs CRV
Diet: CRA vs CRV	1.12	[-0.97, 3.27]	85.10	2.95

Continuous

No continuous ROPE effects available.

Dominance

Dominance (excluding Mounting)

Plots

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

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\(theme\)line $colour [1] “black”

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attr(,“class”) [1] “element_line” “element”

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$linetype [1] 1

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attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 14

$hjust [1] 0.5

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$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

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attr(,“class”) [1] “element_text” “element”

$title NULL

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\(axis.title.x.top\)family NULL

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$margin [1] 0points 0points 3.5points 0points

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\(legend.text\)family NULL

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\(legend.title\)family NULL

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attr(,“class”) [1] “element_text” “element”

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attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 7points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 7points 7points 7points 7points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 5.6points 5.6points 5.6points 5.6points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 3.5points

$strip.switch.pad.wrap [1] 3.5points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce68d99348>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Dominance (excluding Mounting) (n)”

\(labels\)y [1] “”

\(labels\)colour [1] “group_interaction”

\(labels\)fill [1] “group_interaction”

\(labels\)group [1] “y_group”

\(labels\)label [1] “label_text”

attr(,“class”) [1] “gg” “ggplot”

Density Plot

$data # A tibble: 53 × 8 Separation X2 ID Diet BW_Ratio value group_interaction color

1 91 1.3 370 Control 66.2 0.5 Control #2E2E2E 2 91 2.3 400 Control 62.9 2 Control #2E2E2E 3 112 5.3 408 Control 72.3 2 Control #2E2E2E 4 153 3.3 488 Control 72.6 0 Control #2E2E2E 5 153 4.3 496 Control 64.1 0.5 Control #2E2E2E 6 111 6.3 512 Control 69.5 0.5 Control #2E2E2E 7 105 28.3 568 Control 74.9 1 Control #2E2E2E 8 210 25.3 623 Control 68.0 0.5 Control #2E2E2E 9 210 26.3 631 Control 70.1 0.5 Control #2E2E2E 10 156 29.3 639 Control 70.9 0 Control #2E2E2E # ℹ 43 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^value env: 0x000002ce6df4dfc8

$y expr: ^group_interaction env: 0x000002ce6df4dfc8

$fill expr: ^group_interaction env: 0x000002ce6df4dfc8

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.75points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 2.75points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

$face NULL

$colour NULL

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$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.2points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

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$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.2points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

$axis.text.y list() attr(,“class”) [1] “element_blank” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

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$hjust [1] 0

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$margin [1] 0points 0points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x NULL

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.y.left NULL

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$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

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$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.minor.x NULL

$panel.grid.minor.y list() attr(,“class”) [1] “element_blank” “element”

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: TRUE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce6df4dfc8>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Dominance (excluding Mounting) (n)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Summary Statistics

Dominance (excluding Mounting) by Grouping Variables
Summary Statistics with Covariate Descriptives
Diet	N	Mean	SD	Min	Max	Prop Zero (%)	Warning	Body Weight Ratio		Separation Time
								Mean	SD	Mean	SD
Control	14	0.86	0.77	0.00	2.50	14.29	!	69.82	3.54	134.07	39.83
CR25	13	0.92	0.98	0.00	3.50	30.77	!	67.29	2.28	158.08	44.55
CRA	13	0.96	0.92	0.00	2.50	30.77	!	69.72	3.90	156.69	45.66
CRV	13	0.81	1.09	0.00	3.50	38.46	!	68.07	4.48	188.38	48.07

Diagnostics

Summary Table

Model Summary
Family: lognormal
Parameter	Estimate	Std. Error	2.5% CI	97.5% CI	Type
Fixed Effects
Intercept	−15.118	8.817	−32.681	1.945	Fixed Effects
DietCR25	0.053	0.728	−1.396	1.474	Fixed Effects
DietCRA	−0.204	0.725	−1.588	1.222	Fixed Effects
DietCRV	−0.375	0.755	−1.835	1.093	Fixed Effects
BW_Ratio	0.204	0.123	−0.032	0.450	Fixed Effects
Separation	−0.003	0.010	−0.022	0.016	Fixed Effects

Posterior Check

$data # A tibble: 418 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 0.152
2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 1.87
3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 0.000167 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 0.0417
5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 0.579
6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 1.49
7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 0.0508
8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 0.683
9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 0.00241 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 0.0758
# ℹ 408 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^.data$value env: 0x000002cecd588708

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

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\(axis.text\)family NULL

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\(plot.caption\)family NULL

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$angle [1] 90

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attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

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$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: FALSE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002cecd588708>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

ROPE Analysis

Categorical

Main Effect

Effect	Median	[95% HDI]	Direction Prob.	ROPE %
Diet: Control vs CR25
Diet: Control vs CR25	-0.07	[-1.58, 1.30]	54.55	7.70
Diet: Control vs CRA
Diet: Control vs CRA	0.19	[-1.19, 1.58]	59.80	7.55
Diet: Control vs CRV
Diet: Control vs CRV	0.34	[-0.96, 1.91]	68.65	5.85
Diet: CR25 vs CRA
Diet: CR25 vs CRA	0.24	[-1.54, 2.10]	61.60	6.10
Diet: CR25 vs CRV
Diet: CR25 vs CRV	0.46	[-1.38, 2.23]	69.40	4.80
Diet: CRA vs CRV
Diet: CRA vs CRV	0.22	[-1.72, 1.96]	58.70	4.45

Continuous

No continuous ROPE effects available.

Walk overs

Plots

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

$mapping named list() attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$lineend [1] “butt”

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attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 14

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

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\(axis.title.x.top\)family NULL

$face NULL

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$hjust NULL

$vjust [1] 0

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$margin [1] 0points 0points 3.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

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$vjust [1] 1

$angle [1] 90

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$margin [1] 0points 3.5points 0points 0points

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attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

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attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

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attr(,“class”) [1] “element_text” “element”

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\(axis.text.x.top\)family NULL

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attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

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attr(,“class”) [1] “element_text” “element”

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\(axis.text.r\)family NULL

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attr(,“class”) [1] “element_text” “element”

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$axis.ticks.length [1] 3.5points

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$axis.minor.ticks.length [1] 0.75 *

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$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

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$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 7points 7points 7points 7points

$legend.spacing [1] 14points

$legend.spacing.x NULL

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$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

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$legend.key.spacing [1] 7points

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$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

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$hjust NULL

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

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$size NULL

$hjust [1] 0

$vjust NULL

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$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

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$legend.justification [1] “center”

$legend.justification.top NULL

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$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 14points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 7points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

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$size [1] 0.8 *

$hjust [1] 1

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$angle NULL

$lineheight NULL

$margin [1] 7points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

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$hjust [1] 0.5

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$angle NULL

$lineheight NULL

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$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 7points 7points 7points 7points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

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$angle NULL

$lineheight NULL

$margin [1] 5.6points 5.6points 5.6points 5.6points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

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$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 3.5points

$strip.switch.pad.wrap [1] 3.5points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce6a937ce8>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Walkovers (n)”

\(labels\)y [1] “”

\(labels\)colour [1] “group_interaction”

\(labels\)fill [1] “group_interaction”

\(labels\)group [1] “y_group”

\(labels\)label [1] “label_text”

attr(,“class”) [1] “gg” “ggplot”

Density Plot

$data # A tibble: 53 × 8 Separation X2 ID Diet BW_Ratio value group_interaction color

1 91 1.3 370 Control 66.2 0 Control #2E2E2E 2 91 2.3 400 Control 62.9 0 Control #2E2E2E 3 112 5.3 408 Control 72.3 1 Control #2E2E2E 4 153 3.3 488 Control 72.6 0 Control #2E2E2E 5 153 4.3 496 Control 64.1 0.5 Control #2E2E2E 6 111 6.3 512 Control 69.5 0 Control #2E2E2E 7 105 28.3 568 Control 74.9 1 Control #2E2E2E 8 210 25.3 623 Control 68.0 0.5 Control #2E2E2E 9 210 26.3 631 Control 70.1 0 Control #2E2E2E 10 156 29.3 639 Control 70.9 0 Control #2E2E2E # ℹ 43 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^value env: 0x000002ce64210430

$y expr: ^group_interaction env: 0x000002ce64210430

$fill expr: ^group_interaction env: 0x000002ce64210430

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

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attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

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$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

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$vjust [1] 1

$angle NULL

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$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

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$margin [1] 0points 0points 2.75points 0points

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attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

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attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

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$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

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$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

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attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

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\(axis.text.x.top\)family NULL

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attr(,“class”) [1] “element_text” “element”

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\(axis.text.y.right\)family NULL

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\(axis.text.r\)family NULL

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$margin [1] 0points 2.2points 0points 2.2points

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

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$axis.minor.ticks.theta NULL

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$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

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$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

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$axis.minor.ticks.length.y NULL

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$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

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$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

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$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

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$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

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$legend.frame NULL

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\(legend.text\)family NULL

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$hjust NULL

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$margin NULL

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

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\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

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attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

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attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.minor.x NULL

$panel.grid.minor.y list() attr(,“class”) [1] “element_blank” “element”

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

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$size [1] 1.2 *

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$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

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$margin [1] 0points 0points 5.5points 0points

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

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$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

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$size [1] 1.2 *

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

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$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

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\(strip.text.y\)family NULL

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$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

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$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: TRUE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce64210430>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Walkovers (n)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Summary Statistics

Walk overs by Grouping Variables
Summary Statistics with Covariate Descriptives
Diet	N	Mean	SD	Min	Max	Prop Zero (%)	Warning	Body Weight Ratio		Separation Time
								Mean	SD	Mean	SD
Control	14	0.32	0.50	0.00	1.50	64.29	*	69.82	3.54	134.07	39.83
CR25	13	0.58	1.00	0.00	3.50	53.85	*	67.29	2.28	158.08	44.55
CRA	13	0.54	0.59	0.00	2.00	38.46	!	69.72	3.90	156.69	45.66
CRV	13	0.38	0.68	0.00	2.00	69.23	*	68.07	4.48	188.38	48.07

Diagnostics

Summary Table

Model Summary
Family: bernoulli
Parameter	Estimate	Std. Error	2.5% CI	97.5% CI	Type
Fixed Effects
Intercept	−11.379	6.764	−25.179	1.386	Fixed Effects
DietCR25	0.424	0.624	−0.783	1.656	Fixed Effects
DietCRA	0.689	0.605	−0.495	1.876	Fixed Effects
DietCRV	−0.249	0.655	−1.543	1.031	Fixed Effects
BW_Ratio	0.157	0.094	−0.020	0.350	Fixed Effects
Separation	0.001	0.007	−0.013	0.015	Fixed Effects

Posterior Check

$data # A tibble: 583 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 0 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 0 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 0 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 1 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 0 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 0 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 1 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 1 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 0 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 0 # ℹ 573 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^.data$value env: 0x000002ced7827508

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

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$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

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$margin [1] 0points 0points 2.75points 0points

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$angle [1] 90

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$margin [1] 0points 0points 0points 2.75points

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\(axis.text\)family NULL

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\(legend.text\)family NULL

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attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

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\(plot.title\)family NULL

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\(plot.subtitle\)family NULL

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\(plot.caption\)family NULL

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\(plot.tag\)family NULL

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$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

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\(strip.text\)family NULL

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$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

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\(strip.text.y.left\)family NULL

$face NULL

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$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

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attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: FALSE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ced7827508>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

ROPE Analysis

Categorical

Main Effect

Effect	Median	[95% HDI]	Direction Prob.	ROPE %
Diet: Control vs CR25
Diet: Control vs CR25	-0.44	[-1.69, 0.74]	77.05	16.65
Diet: Control vs CRA
Diet: Control vs CRA	-0.68	[-1.88, 0.42]	87.60	12.40
Diet: Control vs CRV
Diet: Control vs CRV	0.25	[-0.91, 1.62]	65.40	19.60
Diet: CR25 vs CRA
Diet: CR25 vs CRA	-0.23	[-1.74, 1.23]	62.55	19.85
Diet: CR25 vs CRV
Diet: CR25 vs CRV	0.70	[-0.85, 2.12]	81.35	12.05
Diet: CRA vs CRV
Diet: CRA vs CRV	0.93	[-0.53, 2.43]	88.95	9.00

Continuous

No continuous ROPE effects available.

Walk unders

Plots

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

$mapping named list() attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 14

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

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\(axis.title.x.top\)family NULL

$face NULL

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$hjust NULL

$vjust [1] 0

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$margin [1] 0points 0points 3.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

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$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

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$margin [1] 0points 3.5points 0points 0points

$debug NULL

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attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

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attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

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$hjust NULL

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attr(,“class”) [1] “element_text” “element”

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\(axis.text.x.top\)family NULL

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attr(,“class”) [1] “element_text” “element”

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\(axis.text.y\)family NULL

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attr(,“class”) [1] “element_text” “element”

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\(axis.text.r\)family NULL

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attr(,“class”) [1] “element_text” “element”

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$axis.ticks.length [1] 3.5points

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$axis.minor.ticks.length [1] 0.75 *

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$axis.line list() attr(,“class”) [1] “element_blank” “element”

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$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 7points 7points 7points 7points

$legend.spacing [1] 14points

$legend.spacing.x NULL

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$legend.key.size [1] 1.2lines

$legend.key.height NULL

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$legend.key.spacing [1] 7points

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$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

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$hjust NULL

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

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$size NULL

$hjust [1] 0

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$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

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$legend.justification [1] “center”

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$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 14points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 7points

$panel.spacing.x NULL

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\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0

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$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

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$size [1] 0.8 *

$hjust [1] 1

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$lineheight NULL

$margin [1] 7points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

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$hjust [1] 0.5

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$angle NULL

$lineheight NULL

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 7points 7points 7points 7points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

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$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

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$angle NULL

$lineheight NULL

$margin [1] 5.6points 5.6points 5.6points 5.6points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

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\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

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$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 3.5points

$strip.switch.pad.wrap [1] 3.5points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce6aca2f20>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Walk unders (n)”

\(labels\)y [1] “”

\(labels\)colour [1] “group_interaction”

\(labels\)fill [1] “group_interaction”

\(labels\)group [1] “y_group”

\(labels\)label [1] “label_text”

attr(,“class”) [1] “gg” “ggplot”

Density Plot

$data # A tibble: 53 × 8 Separation X2 ID Diet BW_Ratio value group_interaction color

1 91 1.3 370 Control 66.2 0.5 Control #2E2E2E 2 91 2.3 400 Control 62.9 2 Control #2E2E2E 3 112 5.3 408 Control 72.3 1 Control #2E2E2E 4 153 3.3 488 Control 72.6 0 Control #2E2E2E 5 153 4.3 496 Control 64.1 0 Control #2E2E2E 6 111 6.3 512 Control 69.5 0.5 Control #2E2E2E 7 105 28.3 568 Control 74.9 0 Control #2E2E2E 8 210 25.3 623 Control 68.0 0 Control #2E2E2E 9 210 26.3 631 Control 70.1 0.5 Control #2E2E2E 10 156 29.3 639 Control 70.9 0 Control #2E2E2E # ℹ 43 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^value env: 0x000002ce639aa2e0

$y expr: ^group_interaction env: 0x000002ce639aa2e0

$fill expr: ^group_interaction env: 0x000002ce639aa2e0

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

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\(rect\)fill [1] “white”

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\(text\)family [1] “”

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$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

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attr(,“class”) [1] “element_text” “element”

$title NULL

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\(plot.title\)family NULL

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\(plot.subtitle\)family NULL

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\(plot.caption\)family NULL

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attr(,“class”) [1] “element_text” “element”

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attr(,“class”) [1] “element_text” “element”

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$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: TRUE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce639aa2e0>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Walk unders (n)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Summary Statistics

Walk unders by Grouping Variables
Summary Statistics with Covariate Descriptives
Diet	N	Mean	SD	Min	Max	Prop Zero (%)	Warning	Body Weight Ratio		Separation Time
								Mean	SD	Mean	SD
Control	14	0.54	0.57	0.00	2.00	35.71	!	69.82	3.54	134.07	39.83
CR25	13	0.35	0.52	0.00	1.50	61.54	*	67.29	2.28	158.08	44.55
CRA	13	0.42	0.67	0.00	2.00	61.54	*	69.72	3.90	156.69	45.66
CRV	13	0.42	0.57	0.00	1.50	53.85	*	68.07	4.48	188.38	48.07

Diagnostics

Summary Table

Model Summary
Family: bernoulli
Parameter	Estimate	Std. Error	2.5% CI	97.5% CI	Type
Fixed Effects
Intercept	−4.726	6.241	−17.179	7.449	Fixed Effects
DietCR25	−0.387	0.611	−1.609	0.795	Fixed Effects
DietCRA	−0.531	0.611	−1.740	0.653	Fixed Effects
DietCRV	−0.070	0.632	−1.318	1.166	Fixed Effects
BW_Ratio	0.081	0.087	−0.088	0.256	Fixed Effects
Separation	−0.005	0.007	−0.018	0.008	Fixed Effects

Posterior Check

$data # A tibble: 583 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 0 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 0 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 1 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 1 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 0 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 0 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 0 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 1 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 1 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 1 # ℹ 573 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^.data$value env: 0x000002ced918b000

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

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$lineend [1] “butt”

$arrow [1] FALSE

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attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

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$linetype [1] 1

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attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

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$hjust [1] 0.5

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attr(,“class”) [1] “element_text” “element”

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$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

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$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

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$legend.ticks.length [1] 0.2 *

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\(legend.text\)family NULL

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$hjust NULL

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$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

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$legend.justification.top NULL

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$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

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$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

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\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

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attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

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$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

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$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

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$size [1] 1.2 *

$hjust [1] 0.5

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$angle NULL

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$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

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$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: FALSE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ced918b000>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

ROPE Analysis

Categorical

Main Effect

Effect	Median	[95% HDI]	Direction Prob.	ROPE %
Diet: Control vs CR25
Diet: Control vs CR25	0.40	[-0.82, 1.56]	73.95	19.90
Diet: Control vs CRA
Diet: Control vs CRA	0.52	[-0.62, 1.75]	81.70	16.90
Diet: Control vs CRV
Diet: Control vs CRV	0.07	[-1.10, 1.39]	54.50	21.15
Diet: CR25 vs CRA
Diet: CR25 vs CRA	0.15	[-1.23, 1.59]	57.75	18.10
Diet: CR25 vs CRV
Diet: CR25 vs CRV	-0.33	[-1.78, 1.10]	66.85	17.85
Diet: CRA vs CRV
Diet: CRA vs CRV	-0.46	[-2.07, 0.84]	73.40	16.20

Continuous

No continuous ROPE effects available.

Dominance (including Mounting)

Plots

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

$mapping named list() attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 14

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

$axis.title.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 3.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 3.5points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

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$vjust [1] 1

$angle [1] -90

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$margin [1] 0points 0points 0points 3.5points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

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$angle NULL

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$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.text.x.top\)family NULL

$face NULL

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$margin [1] 0points 0points 2.8points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

$face NULL

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$hjust [1] 1

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$margin [1] 0points 2.8points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

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$margin [1] 0points 0points 0points 2.8points

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attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

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$hjust [1] 0.5

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$margin [1] 0points 2.8points 0points 2.8points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

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$axis.ticks.length [1] 3.5points

$axis.ticks.length.x NULL

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$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

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$axis.minor.ticks.length.y NULL

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$axis.minor.ticks.length.theta NULL

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$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

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$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 7points 7points 7points 7points

$legend.spacing [1] 14points

$legend.spacing.x NULL

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$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 7points

$legend.key.spacing.x NULL

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$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

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$size [1] 0.8 *

$hjust NULL

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$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 14points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 7points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 7points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

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$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 7points 7points 7points 7points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 5.6points 5.6points 5.6points 5.6points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 3.5points

$strip.switch.pad.wrap [1] 3.5points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce6b574118>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Dominance (including Mounting) (n)”

\(labels\)y [1] “”

\(labels\)colour [1] “group_interaction”

\(labels\)fill [1] “group_interaction”

\(labels\)group [1] “y_group”

\(labels\)label [1] “label_text”

attr(,“class”) [1] “gg” “ggplot”

Density Plot

$data # A tibble: 53 × 8 Separation X2 ID Diet BW_Ratio value group_interaction color

1 91 1.3 370 Control 66.2 24.5 Control #2E2E2E 2 91 2.3 400 Control 62.9 8.5 Control #2E2E2E 3 112 5.3 408 Control 72.3 15 Control #2E2E2E 4 153 3.3 488 Control 72.6 13 Control #2E2E2E 5 153 4.3 496 Control 64.1 16.5 Control #2E2E2E 6 111 6.3 512 Control 69.5 9.5 Control #2E2E2E 7 105 28.3 568 Control 74.9 5 Control #2E2E2E 8 210 25.3 623 Control 68.0 7.5 Control #2E2E2E 9 210 26.3 631 Control 70.1 6 Control #2E2E2E 10 156 29.3 639 Control 70.9 3 Control #2E2E2E # ℹ 43 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

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attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: TRUE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

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$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Dominance (including Mounting) (n)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

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attr(,“class”) [1] “gg” “ggplot”

Summary Statistics

Dominance (including Mounting) by Grouping Variables
Summary Statistics with Covariate Descriptives
Diet	N	Mean	SD	Min	Max	Prop Zero (%)	Warning	Body Weight Ratio		Separation Time
								Mean	SD	Mean	SD
Control	14	10.68	5.65	3.00	24.50	0.00		69.82	3.54	134.07	39.83
CR25	13	9.00	5.33	3.00	20.00	0.00		67.29	2.28	158.08	44.55
CRA	13	6.35	4.79	0.00	14.50	15.38		69.72	3.90	156.69	45.66
CRV	13	10.92	9.24	1.00	31.50	0.00		68.07	4.48	188.38	48.07

Diagnostics

Summary Table

Model Summary
Family: lognormal
Parameter	Estimate	Std. Error	2.5% CI	97.5% CI	Type
Fixed Effects
Intercept	−4.982	4.133	−13.084	3.176	Fixed Effects
DietCR25	0.088	0.477	−0.859	1.028	Fixed Effects
DietCRA	−1.169	0.473	−2.103	−0.233	Fixed Effects
DietCRV	−0.100	0.495	−1.068	0.882	Fixed Effects
BW_Ratio	0.092	0.057	−0.022	0.204	Fixed Effects
Separation	0.004	0.005	−0.005	0.013	Fixed Effects

Posterior Check

$data # A tibble: 561 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 5.99 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 8.71 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 1.02 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 3.15 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 6.40 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 10.4 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 3.91 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 213.
9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 6.57 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 5.59 # ℹ 551 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

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$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: FALSE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002cedac0dc78>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

ROPE Analysis

Categorical

Main Effect

Effect	Median	[95% HDI]	Direction Prob.	ROPE %
Diet: Control vs CR25
Diet: Control vs CR25	-0.10	[-0.97, 0.86]	56.95	10.75
Diet: Control vs CRA
Diet: Control vs CRA	1.17	[0.25, 2.11]	99.30	0.60
Diet: Control vs CRV
Diet: Control vs CRV	0.09	[-0.96, 0.97]	56.90	11.40
Diet: CR25 vs CRA
Diet: CR25 vs CRA	1.25	[0.16, 2.22]	99.35	0.65
Diet: CR25 vs CRV
Diet: CR25 vs CRV	0.17	[-0.97, 1.21]	62.05	10.25
Diet: CRA vs CRV
Diet: CRA vs CRV	-1.07	[-2.09, 0.04]	97.45	1.55

Continuous

No continuous ROPE effects available.

Mounting

Mounting

Plots

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

$mapping named list() attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 14

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

$axis.title.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 3.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 3.5points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

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$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 3.5points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

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$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.text.x.top\)family NULL

$face NULL

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$margin [1] 0points 0points 2.8points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

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$hjust [1] 1

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$margin [1] 0points 2.8points 0points 0points

$debug NULL

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attr(,“class”) [1] “element_text” “element”

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\(axis.text.y.right\)family NULL

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$hjust [1] 0

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$margin [1] 0points 0points 0points 2.8points

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attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

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$hjust [1] 0.5

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$margin [1] 0points 2.8points 0points 2.8points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

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$axis.ticks.length [1] 3.5points

$axis.ticks.length.x NULL

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$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

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$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

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$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 7points 7points 7points 7points

$legend.spacing [1] 14points

$legend.spacing.x NULL

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$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

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$legend.key.spacing [1] 7points

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$legend.ticks.length [1] 0.2 *

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\(legend.text\)family NULL

$face NULL

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$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

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$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 14points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 7points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 7points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

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$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 7points 7points 7points 7points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 5.6points 5.6points 5.6points 5.6points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 3.5points

$strip.switch.pad.wrap [1] 3.5points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce689a03f8>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Mounting (n)”

\(labels\)y [1] “”

\(labels\)colour [1] “group_interaction”

\(labels\)fill [1] “group_interaction”

\(labels\)group [1] “y_group”

\(labels\)label [1] “label_text”

attr(,“class”) [1] “gg” “ggplot”

Density Plot

$data # A tibble: 53 × 8 Separation X2 ID Diet BW_Ratio value group_interaction color

1 91 1.3 370 Control 66.2 24 Control #2E2E2E 2 91 2.3 400 Control 62.9 6.5 Control #2E2E2E 3 112 5.3 408 Control 72.3 13 Control #2E2E2E 4 153 3.3 488 Control 72.6 13 Control #2E2E2E 5 153 4.3 496 Control 64.1 16 Control #2E2E2E 6 111 6.3 512 Control 69.5 9 Control #2E2E2E 7 105 28.3 568 Control 74.9 4 Control #2E2E2E 8 210 25.3 623 Control 68.0 7 Control #2E2E2E 9 210 26.3 631 Control 70.1 5.5 Control #2E2E2E 10 156 29.3 639 Control 70.9 3 Control #2E2E2E # ℹ 43 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^value env: 0x000002ce6d199e38

$y expr: ^group_interaction env: 0x000002ce6d199e38

$fill expr: ^group_interaction env: 0x000002ce6d199e38

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.75points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

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attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: TRUE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce6d199e38>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Mounting (n)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Summary Statistics

Mounting by Grouping Variables
Summary Statistics with Covariate Descriptives
Diet	N	Mean	SD	Min	Max	Prop Zero (%)	Warning	Body Weight Ratio		Separation Time
								Mean	SD	Mean	SD
Control	14	9.82	5.61	3.00	24.00	0.00		69.82	3.54	134.07	39.83
CR25	13	8.08	5.16	1.50	19.00	0.00		67.29	2.28	158.08	44.55
CRA	13	5.38	4.15	0.00	12.00	15.38		69.72	3.90	156.69	45.66
CRV	13	10.12	8.76	1.00	29.00	0.00		68.07	4.48	188.38	48.07

Diagnostics

Summary Table

Model Summary
Family: lognormal
Parameter	Estimate	Std. Error	2.5% CI	97.5% CI	Type
Fixed Effects
Intercept	−5.173	4.216	−13.572	3.074	Fixed Effects
DietCR25	0.054	0.475	−0.888	0.985	Fixed Effects
DietCRA	−1.234	0.474	−2.149	−0.309	Fixed Effects
DietCRV	−0.113	0.492	−1.086	0.853	Fixed Effects
BW_Ratio	0.092	0.058	−0.023	0.207	Fixed Effects
Separation	0.005	0.005	−0.004	0.014	Fixed Effects

Posterior Check

$data # A tibble: 561 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 8.41 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 9.44 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 4.77 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 49.5
5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 2.53 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 28.6
7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 0.702 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 2.83 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 38.5
10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 1.32 # ℹ 551 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

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$guides <Guides[0] ggproto object>

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\(rect\)fill [1] “white”

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\(text\)family [1] “”

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$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

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\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: FALSE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002cecbaa19a0>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

ROPE Analysis

Categorical

Main Effect

Effect	Median	[95% HDI]	Direction Prob.	ROPE %
Diet: Control vs CR25
Diet: Control vs CR25	-0.06	[-1.01, 0.86]	55.05	11.85
Diet: Control vs CRA
Diet: Control vs CRA	1.22	[0.32, 2.16]	99.45	0.45
Diet: Control vs CRV
Diet: Control vs CRV	0.09	[-0.87, 1.10]	58.25	12.30
Diet: CR25 vs CRA
Diet: CR25 vs CRA	1.30	[0.21, 2.35]	99.15	0.70
Diet: CR25 vs CRV
Diet: CR25 vs CRV	0.14	[-0.88, 1.23]	60.85	10.85
Diet: CRA vs CRV
Diet: CRA vs CRV	-1.13	[-2.27, -0.04]	97.50	1.10

Continuous

No continuous ROPE effects available.

Submissive

Submissive Behaviors

Plots

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

$mapping named list() attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 14

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

$axis.title.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.title.x.top\)family NULL

$face NULL

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$vjust [1] 0

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$margin [1] 0points 0points 3.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

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$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 3.5points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

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$margin [1] 0points 0points 0points 3.5points

$debug NULL

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attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

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$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.text.x.top\)family NULL

$face NULL

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$margin [1] 0points 0points 2.8points 0points

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

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\(axis.text.r\)family NULL

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

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$axis.ticks.length [1] 3.5points

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$axis.minor.ticks.length [1] 0.75 *

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$legend.margin [1] 7points 7points 7points 7points

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\(legend.text\)family NULL

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attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

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$hjust [1] 0

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

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$legend.justification [1] “center”

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$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 14points

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$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 7points

$panel.spacing.x NULL

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\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

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attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

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attr(,“class”) [1] “element_line” “element”

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$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

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$size [1] 1.2 *

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$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

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$hjust [1] 0

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$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

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$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

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attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 7points 7points 7points 7points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

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$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

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$margin [1] 5.6points 5.6points 5.6points 5.6points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

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\(strip.text.y\)family NULL

$face NULL

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$angle [1] -90

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$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

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$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 3.5points

$strip.switch.pad.wrap [1] 3.5points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce682b5540>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Submissive Behaviors (n)”

\(labels\)y [1] “”

\(labels\)colour [1] “group_interaction”

\(labels\)fill [1] “group_interaction”

\(labels\)group [1] “y_group”

\(labels\)label [1] “label_text”

attr(,“class”) [1] “gg” “ggplot”

Density Plot

$data # A tibble: 53 × 8 Separation X2 ID Diet BW_Ratio value group_interaction color

1 91 1.3 370 Control 66.2 7 Control #2E2E2E 2 91 2.3 400 Control 62.9 7 Control #2E2E2E 3 112 5.3 408 Control 72.3 16 Control #2E2E2E 4 153 3.3 488 Control 72.6 13 Control #2E2E2E 5 153 4.3 496 Control 64.1 20.5 Control #2E2E2E 6 111 6.3 512 Control 69.5 14 Control #2E2E2E 7 105 28.3 568 Control 74.9 26 Control #2E2E2E 8 210 25.3 623 Control 68.0 5.5 Control #2E2E2E 9 210 26.3 631 Control 70.1 9 Control #2E2E2E 10 156 29.3 639 Control 70.9 19.5 Control #2E2E2E # ℹ 43 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^value env: 0x000002ce6c913ee0

$y expr: ^group_interaction env: 0x000002ce6c913ee0

$fill expr: ^group_interaction env: 0x000002ce6c913ee0

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

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$margin [1] 0points 0points 2.75points 0points

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attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

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$vjust [1] 1

$angle [1] 90

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$margin [1] 0points 2.75points 0points 0points

$debug NULL

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attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

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$vjust [1] 1

$angle [1] -90

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$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

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$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

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$margin [1] 2.2points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x.top\)family NULL

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$vjust [1] 0

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$margin [1] 0points 0points 2.2points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

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\(axis.text.y.right\)family NULL

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$margin [1] 0points 0points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

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$hjust [1] 0.5

$vjust NULL

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$margin [1] 0points 2.2points 0points 2.2points

$debug NULL

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attr(,“class”) [1] “element_text” “element”

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attr(,“class”) [1] “element_text” “element”

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$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

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$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ce6c913ee0>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Submissive Behaviors (n)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Summary Statistics

Submissive Behaviors by Grouping Variables
Summary Statistics with Covariate Descriptives
Diet	N	Mean	SD	Min	Max	Prop Zero (%)	Warning	Body Weight Ratio		Separation Time
								Mean	SD	Mean	SD
Control	14	13.39	6.29	5.00	26.00	0.00		69.82	3.54	134.07	39.83
CR25	13	8.69	3.67	3.00	17.00	0.00		67.29	2.28	158.08	44.55
CRA	13	9.00	3.95	0.50	14.50	0.00		69.72	3.90	156.69	45.66
CRV	13	10.54	4.85	4.00	22.50	0.00		68.07	4.48	188.38	48.07

Diagnostics

Summary Table

Model Summary
Family: gaussian
Parameter	Estimate	Std. Error	2.5% CI	97.5% CI	Type
Fixed Effects
Intercept	−11.139	13.428	−37.503	15.158	Fixed Effects
DietCR25	−0.561	0.861	−2.242	1.133	Fixed Effects
DietCRA	−0.759	0.854	−2.444	0.934	Fixed Effects
DietCRV	0.156	0.855	−1.532	1.851	Fixed Effects
BW_Ratio	0.349	0.186	−0.017	0.712	Fixed Effects
Separation	−0.014	0.015	−0.044	0.015	Fixed Effects

Posterior Check

$data # A tibble: 583 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 19.2 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 12.5 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 2.62 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 20.5 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 5.17 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 15.9 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 11.3 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 21.0 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 6.17 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 10.3 # ℹ 573 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

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$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^.data$value env: 0x000002ceca035070

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\(rect\)fill [1] “white”

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\(text\)family [1] “”

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attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: FALSE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002ceca035070>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

ROPE Analysis

Categorical

Main Effect

Effect	Median	[95% HDI]	Direction Prob.	ROPE %
Diet: Control vs CR25
Diet: Control vs CR25	0.56	[-1.06, 2.42]	73.35	37.35
Diet: Control vs CRA
Diet: Control vs CRA	0.77	[-0.86, 2.47]	81.30	29.65
Diet: Control vs CRV
Diet: Control vs CRV	-0.20	[-1.78, 1.57]	58.90	45.00
Diet: CR25 vs CRA
Diet: CR25 vs CRA	0.17	[-2.08, 2.31]	55.55	32.85
Diet: CR25 vs CRV
Diet: CR25 vs CRV	-0.77	[-2.96, 1.57]	74.20	27.80
Diet: CRA vs CRV
Diet: CRA vs CRV	-0.98	[-3.12, 1.18]	79.45	24.10

Continuous

No continuous ROPE effects available.

End of Document