Introduction

The results of the analysis are presented using the following structure:

  1. Searchable High‑Level Summary: Provides a brief overview of the key findings from our analysis with a table of effects
  2. Visualisation, Descriptive Statistics and Diagnostics by Variable: Exploratory data analysis and model diagnostics for each behavioral measure
  3. Searchable ROPE Analysis Table: Model diagnostics to check the fit of the models

Effects of Interest

  • No meaningful effects found

Searchable High‑Level Summary

Enter search terms in the column headers to filter the table below

Note: TD in the Higher column indicates a Trend Difference for the continuous variable.

Visualisation, Descriptive Statistics and Diagnostics by Variable

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

$mapping named list() attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 14

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

$axis.title.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 3.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 3.5points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 3.5points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.8points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 1

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.8points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.8points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.8points 0points 2.8points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y NULL

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 3.5points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 7points 7points 7points 7points

$legend.spacing [1] 14points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 7points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 14points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 7points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 7points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 7points 7points 7points 7points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 5.6points 5.6points 5.6points 5.6points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 3.5points

$strip.switch.pad.wrap [1] 3.5points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b8ffb60d58>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Fur (PND)”

\(labels\)y [1] “”

\(labels\)colour [1] “group_interaction”

\(labels\)fill [1] “group_interaction”

\(labels\)group [1] “y_group”

\(labels\)label [1] “label_text”

attr(,“class”) [1] “gg” “ggplot”

Density Plot

$data # A tibble: 46 × 5 ID Diet value group_interaction color

1 356 Control 9 Control #2E2E2E 2 344 CR25 9 CR25 #E69F00 3 350 CR25 9 CR25 #E69F00 4 349 CRV 9 CRV #009E73 5 357 Control 9 Control #2E2E2E 6 360 Control 9 Control #2E2E2E 7 334 CRA 9 CRA #56B4E9 8 331 CRV 9 CRV #009E73 9 345 CR25 8 CR25 #E69F00 10 365 CR25 8 CR25 #E69F00 # ℹ 36 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^value env: 0x000002b9010b4900

$y expr: ^group_interaction env: 0x000002b9010b4900

$fill expr: ^group_interaction env: 0x000002b9010b4900

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.75points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 2.75points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.2points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.2points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

$axis.text.y list() attr(,“class”) [1] “element_blank” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x NULL

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.minor.x NULL

$panel.grid.minor.y list() attr(,“class”) [1] “element_blank” “element”

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: TRUE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b9010b4900>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Fur (PND)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Fur Appearance by Grouping Variables
Diet n Mean SD Min Max % of Zeros Zero Flag
Control 12.0 8.6 0.5 8.0 9.0 0.0
CR25 12.0 8.7 0.8 8.0 10.0 0.0
CRA 10.0 8.7 0.8 8.0 10.0 0.0
CRV 12.0 8.7 0.7 8.0 10.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: poisson
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 2.143 0.097 1.947 2.327 Fixed Effects
DietCR25 0.010 0.136 −0.254 0.276 Fixed Effects
DietCRA 0.013 0.143 −0.268 0.298 Fixed Effects
DietCRV 0.010 0.137 −0.254 0.280 Fixed Effects

Posterior Check

$data # A tibble: 506 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 5 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 2 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 9 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 11 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 6 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 13 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 10 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 7 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 10 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 3 # ℹ 496 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^.data$value env: 0x000002b8f4213b28

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.75points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 2.75points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.2points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.2points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 1

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x NULL

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y NULL

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “right”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: FALSE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b8f4213b28>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.00 [-0.27, 0.27] 50.50 3.70
Diet: Control vs CRA
Diet: Control vs CRA -0.01 [-0.29, 0.28] 52.90 3.50
Diet: Control vs CRV
Diet: Control vs CRV -0.01 [-0.27, 0.25] 52.00 4.50
Diet: CR25 vs CRA
Diet: CR25 vs CRA 0.00 [-0.28, 0.28] 50.75 3.75
Diet: CR25 vs CRV
Diet: CR25 vs CRV 0.00 [-0.27, 0.27] 50.15 4.75
Diet: CRA vs CRV
Diet: CRA vs CRV 0.00 [-0.31, 0.26] 50.80 4.20

No continuous ROPE effects available.

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

$mapping named list() attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 14

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

$axis.title.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 3.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 3.5points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 3.5points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.8points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 1

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.8points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.8points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.8points 0points 2.8points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y NULL

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 3.5points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 7points 7points 7points 7points

$legend.spacing [1] 14points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 7points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 14points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 7points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 7points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 7points 7points 7points 7points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 5.6points 5.6points 5.6points 5.6points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 3.5points

$strip.switch.pad.wrap [1] 3.5points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b9002c0510>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Pinnea Detachment (PND)”

\(labels\)y [1] “”

\(labels\)colour [1] “group_interaction”

\(labels\)fill [1] “group_interaction”

\(labels\)group [1] “y_group”

\(labels\)label [1] “label_text”

attr(,“class”) [1] “gg” “ggplot”

Density Plot

$data # A tibble: 46 × 5 ID Diet value group_interaction color

1 356 Control 5 Control #2E2E2E 2 344 CR25 3 CR25 #E69F00 3 350 CR25 4 CR25 #E69F00 4 349 CRV 3 CRV #009E73 5 357 Control 6 Control #2E2E2E 6 360 Control 5 Control #2E2E2E 7 334 CRA 5 CRA #56B4E9 8 331 CRV 3 CRV #009E73 9 345 CR25 3 CR25 #E69F00 10 365 CR25 4 CR25 #E69F00 # ℹ 36 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^value env: 0x000002b901f7cc40

$y expr: ^group_interaction env: 0x000002b901f7cc40

$fill expr: ^group_interaction env: 0x000002b901f7cc40

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.75points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 2.75points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.2points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.2points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

$axis.text.y list() attr(,“class”) [1] “element_blank” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x NULL

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.minor.x NULL

$panel.grid.minor.y list() attr(,“class”) [1] “element_blank” “element”

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: TRUE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b901f7cc40>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Pinnea Detachment (PND)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Pinnea Detachment by Grouping Variables
Diet n Mean SD Min Max % of Zeros Zero Flag
Control 12.0 4.5 1.2 3.0 6.0 0.0
CR25 12.0 4.0 1.2 3.0 7.0 0.0
CRA 10.0 5.0 1.7 3.0 8.0 0.0
CRV 12.0 4.1 1.0 3.0 6.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: poisson
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 1.492 0.133 1.219 1.741 Fixed Effects
DietCR25 −0.116 0.193 −0.496 0.262 Fixed Effects
DietCRA 0.106 0.191 −0.276 0.481 Fixed Effects
DietCRV −0.094 0.191 −0.468 0.279 Fixed Effects

Posterior Check

$data # A tibble: 506 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 2 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 5 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 7 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 1 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 5 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 3 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 6 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 4 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 7 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 4 # ℹ 496 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^.data$value env: 0x000002b95567f0b0

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.75points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 2.75points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.2points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.2points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 1

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x NULL

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y NULL

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “right”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: FALSE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b95567f0b0>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.12 [-0.27, 0.48] 73.20 10.75
Diet: Control vs CRA
Diet: Control vs CRA -0.11 [-0.47, 0.27] 71.10 9.55
Diet: Control vs CRV
Diet: Control vs CRV 0.09 [-0.27, 0.47] 70.05 10.65
Diet: CR25 vs CRA
Diet: CR25 vs CRA -0.22 [-0.63, 0.18] 87.85 6.10
Diet: CR25 vs CRV
Diet: CR25 vs CRV -0.02 [-0.42, 0.34] 54.25 10.60
Diet: CRA vs CRV
Diet: CRA vs CRV 0.21 [-0.15, 0.61] 85.05 6.70

No continuous ROPE effects available.

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

$mapping named list() attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 14

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

$axis.title.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 3.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 3.5points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 3.5points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.8points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 1

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.8points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.8points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.8points 0points 2.8points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y NULL

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 3.5points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 7points 7points 7points 7points

$legend.spacing [1] 14points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 7points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 14points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 7points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 7points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 7points 7points 7points 7points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 5.6points 5.6points 5.6points 5.6points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 3.5points

$strip.switch.pad.wrap [1] 3.5points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b9005b6e78>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Eye Opening (PND)”

\(labels\)y [1] “”

\(labels\)colour [1] “group_interaction”

\(labels\)fill [1] “group_interaction”

\(labels\)group [1] “y_group”

\(labels\)label [1] “label_text”

attr(,“class”) [1] “gg” “ggplot”

Density Plot

$data # A tibble: 46 × 5 ID Diet value group_interaction color

1 356 Control 15 Control #2E2E2E 2 344 CR25 15 CR25 #E69F00 3 350 CR25 15 CR25 #E69F00 4 349 CRV 15 CRV #009E73 5 357 Control 16 Control #2E2E2E 6 360 Control 14 Control #2E2E2E 7 334 CRA 14 CRA #56B4E9 8 331 CRV 14 CRV #009E73 9 345 CR25 15 CR25 #E69F00 10 365 CR25 15 CR25 #E69F00 # ℹ 36 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^value env: 0x000002b902860070

$y expr: ^group_interaction env: 0x000002b902860070

$fill expr: ^group_interaction env: 0x000002b902860070

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.75points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 2.75points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.2points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.2points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

$axis.text.y list() attr(,“class”) [1] “element_blank” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x NULL

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.minor.x NULL

$panel.grid.minor.y list() attr(,“class”) [1] “element_blank” “element”

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: TRUE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b902860070>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Eye Opening (PND)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Eye Opening by Grouping Variables
Diet n Mean SD Min Max % of Zeros Zero Flag
Control 12.0 15.2 0.8 14.0 16.0 0.0
CR25 12.0 15.1 0.3 15.0 16.0 0.0
CRA 10.0 14.8 0.4 14.0 15.0 0.0
CRV 12.0 15.2 0.6 14.0 16.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: poisson
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 2.721 0.073 2.573 2.858 Fixed Effects
DietCR25 −0.011 0.104 −0.216 0.196 Fixed Effects
DietCRA −0.029 0.110 −0.244 0.185 Fixed Effects
DietCRV −0.005 0.103 −0.205 0.196 Fixed Effects

Posterior Check

$data # A tibble: 506 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 15 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 8 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 15 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 14 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 13 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 13 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 15 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 26 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 14 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 16 # ℹ 496 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^.data$value env: 0x000002b95708ef90

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.75points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 2.75points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.2points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.2points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 1

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x NULL

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y NULL

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “right”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: FALSE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b95708ef90>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.02 [-0.18, 0.23] 56.50 2.90
Diet: Control vs CRA
Diet: Control vs CRA 0.03 [-0.16, 0.27] 59.55 2.85
Diet: Control vs CRV
Diet: Control vs CRV 0.01 [-0.19, 0.20] 52.25 3.05
Diet: CR25 vs CRA
Diet: CR25 vs CRA 0.01 [-0.20, 0.23] 53.85 2.20
Diet: CR25 vs CRV
Diet: CR25 vs CRV -0.01 [-0.23, 0.19] 53.20 2.10
Diet: CRA vs CRV
Diet: CRA vs CRV -0.02 [-0.23, 0.19] 58.90 2.20

No continuous ROPE effects available.

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

$mapping named list() attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 14

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

$axis.title.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 3.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 3.5points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 3.5points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.8points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 1

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.8points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.8points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.8points 0points 2.8points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y NULL

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 3.5points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 7points 7points 7points 7points

$legend.spacing [1] 14points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 7points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 14points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 7points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 7points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 7points 7points 7points 7points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 5.6points 5.6points 5.6points 5.6points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 3.5points

$strip.switch.pad.wrap [1] 3.5points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b900975698>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Vaginal Opening (PND)”

\(labels\)y [1] “”

\(labels\)colour [1] “group_interaction”

\(labels\)fill [1] “group_interaction”

\(labels\)group [1] “y_group”

\(labels\)label [1] “label_text”

attr(,“class”) [1] “gg” “ggplot”

Density Plot

$data # A tibble: 46 × 5 ID Diet value group_interaction color

1 356 Control 34 Control #2E2E2E 2 344 CR25 34 CR25 #E69F00 3 350 CR25 34 CR25 #E69F00 4 349 CRV 33 CRV #009E73 5 357 Control 29 Control #2E2E2E 6 360 Control 34 Control #2E2E2E 7 334 CRA 33 CRA #56B4E9 8 331 CRV 30 CRV #009E73 9 345 CR25 32 CR25 #E69F00 10 365 CR25 33 CR25 #E69F00 # ℹ 36 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^value env: 0x000002b902f2a580

$y expr: ^group_interaction env: 0x000002b902f2a580

$fill expr: ^group_interaction env: 0x000002b902f2a580

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.75points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 2.75points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.2points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.2points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

$axis.text.y list() attr(,“class”) [1] “element_blank” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x NULL

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.minor.x NULL

$panel.grid.minor.y list() attr(,“class”) [1] “element_blank” “element”

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: TRUE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b902f2a580>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Vaginal Opening (PND)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Vaginal Opening by Grouping Variables
Diet n Mean SD Min Max % of Zeros Zero Flag
Control 12.0 32.0 2.1 29.0 35.0 0.0
CR25 12.0 31.9 1.5 30.0 34.0 0.0
CRA 10.0 32.4 2.0 30.0 36.0 0.0
CRV 12.0 33.3 2.4 30.0 38.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: gaussian
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 32.250 0.477 31.317 33.201 Fixed Effects
DietCR25 −0.263 0.621 −1.500 0.957 Fixed Effects
DietCRA 0.097 0.629 −1.138 1.313 Fixed Effects
DietCRV 0.735 0.641 −0.528 1.993 Fixed Effects

Posterior Check

$data # A tibble: 440 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 34.4 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 28.1 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 32.1 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 29.0 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 31.3 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 32.9 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 29.9 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 33.2 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 32.6 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 33.6 # ℹ 430 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^.data$value env: 0x000002b958bc2f20

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.75points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 2.75points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.2points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.2points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 1

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x NULL

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y NULL

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “right”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: FALSE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b958bc2f20>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.23 [-1.05, 1.48] 63.20 23.55
Diet: Control vs CRA
Diet: Control vs CRA -0.08 [-1.31, 1.18] 55.05 24.70
Diet: Control vs CRV
Diet: Control vs CRV -0.74 [-2.01, 0.49] 87.65 12.65
Diet: CR25 vs CRA
Diet: CR25 vs CRA -0.31 [-1.69, 1.14] 65.80 18.60
Diet: CR25 vs CRV
Diet: CR25 vs CRV -0.97 [-2.35, 0.70] 89.95 9.25
Diet: CRA vs CRV
Diet: CRA vs CRV -0.66 [-2.14, 0.77] 81.60 14.70

No continuous ROPE effects available.

Bar Plot

$data list() attr(,“class”) [1] “waiver”

\(layers\)layers[[1]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, fill = ~group_interaction, group = ~y_group geom_boxplot: outliers = TRUE, outlier.colour = NULL, outlier.fill = NULL, outlier.shape = NA, outlier.size = 1.5, outlier.stroke = 0.5, outlier.alpha = NULL, notch = FALSE, notchwidth = 0.5, staplewidth = 0, varwidth = FALSE, na.rm = FALSE, orientation = y, width = 0.5, fatten = 8.2 stat_boxplot: na.rm = FALSE, orientation = y, width = 0.5 position_dodge2

$layers[[2]] mapping: x = ~value, y = ~y_group, colour = ~group_interaction, group = ~y_group geom_point: na.rm = FALSE stat_identity: na.rm = FALSE position_beeswarm

$layers[[3]] mapping: x = ~label_x, y = ~y_group, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

$mapping named list() attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.6363636

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 14

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

$axis.title.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 3.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 3.5points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 3.5points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x list() attr(,“class”) [1] “element_blank” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.8points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 1

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.8points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.8points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.8points 0points 2.8points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y NULL

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 3.5points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 7points 7points 7points 7points

$legend.spacing [1] 14points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 7points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 14points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 7points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 7points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 7points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 7points 7points 7points 7points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 5.6points 5.6points 5.6points 5.6points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 3.5points

$strip.switch.pad.wrap [1] 3.5points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordFlip, CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b900d0cba0>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Testes Descent (PND)”

\(labels\)y [1] “”

\(labels\)colour [1] “group_interaction”

\(labels\)fill [1] “group_interaction”

\(labels\)group [1] “y_group”

\(labels\)label [1] “label_text”

attr(,“class”) [1] “gg” “ggplot”

Density Plot

$data # A tibble: 46 × 5 ID Diet value group_interaction color

1 356 Control 20 Control #2E2E2E 2 344 CR25 23 CR25 #E69F00 3 350 CR25 20 CR25 #E69F00 4 349 CRV 22 CRV #009E73 5 357 Control 23 Control #2E2E2E 6 360 Control 21 Control #2E2E2E 7 334 CRA 20 CRA #56B4E9 8 331 CRV 23 CRV #009E73 9 345 CR25 20 CR25 #E69F00 10 365 CR25 20 CR25 #E69F00 # ℹ 36 more rows

\(layers\)layers[[1]] mapping: colour = ~group_interaction, fill = ~group_interaction geom_density_ridges: na.rm = FALSE, panel_scaling = TRUE stat_density_ridges: na.rm = FALSE, jittered_points = TRUE, quantile_lines = TRUE, quantiles = 2 position_points_sina

$layers[[2]] mapping: x = ~label_x_position, y = ~group_interaction, label = ~label_text, fill = ~group_interaction, colour = ~group_interaction geom_label: parse = FALSE, label.padding = 0.25, label.r = 0.15, label.size = 0, size.unit = mm, na.rm = FALSE stat_identity: na.rm = FALSE position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^value env: 0x000002b903dae270

$y expr: ^group_interaction env: 0x000002b903dae270

$fill expr: ^group_interaction env: 0x000002b903dae270

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.75points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 2.75points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.2points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.2points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

$axis.text.y list() attr(,“class”) [1] “element_blank” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x NULL

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “none”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y list() attr(,“class”) [1] “element_blank” “element”

$panel.grid.minor.x NULL

$panel.grid.minor.y list() attr(,“class”) [1] “element_blank” “element”

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: TRUE distance: function draw_panel: function expand: TRUE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b903dae270>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$x [1] “Testes Descent (PND)”

\(labels\)y [1] “”

\(labels\)fill [1] “group_interaction”

\(labels\)colour [1] “group_interaction”

\(labels\)label [1] “label_text”

\(labels\)height [1] “density” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Testes Descent by Grouping Variables
Diet n Mean SD Min Max % of Zeros Zero Flag
Control 12.0 20.8 1.2 19.0 23.0 0.0
CR25 12.0 20.8 1.3 19.0 23.0 0.0
CRA 10.0 21.1 1.4 20.0 24.0 0.0
CRV 12.0 21.2 1.4 19.0 24.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: poisson
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 3.029 0.063 2.905 3.150 Fixed Effects
DietCR25 0.004 0.090 −0.172 0.178 Fixed Effects
DietCRA 0.018 0.093 −0.166 0.202 Fixed Effects
DietCRV 0.021 0.089 −0.151 0.196 Fixed Effects

Posterior Check

$data # A tibble: 495 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 35 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 19 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 20 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 16 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 24 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 20 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 19 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 26 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 21 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 15 # ℹ 485 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$scales <ggproto object: Class ScalesList, gg> add: function add_defaults: function add_missing: function backtransform_df: function clone: function find: function get_scales: function has_scale: function input: function map_df: function n: function non_position_scales: function scales: list set_palettes: function train_df: function transform_df: function super: <ggproto object: Class ScalesList, gg>

$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^.data$value env: 0x000002b95a673f20

attr(,“class”) [1] “uneval”

\(theme\)line $colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$lineend [1] “butt”

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

\(rect\)fill [1] “white”

$colour [1] “black”

$linewidth [1] 0.5

$linetype [1] 1

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_rect” “element”

\(text\)family [1] “”

$face [1] “plain”

$colour [1] “black”

$size [1] 11

$hjust [1] 0.5

$vjust [1] 0.5

$angle [1] 0

$lineheight [1] 0.9

$margin [1] 0points 0points 0points 0points

$debug [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$title NULL

$aspect.ratio NULL

$axis.title NULL

\(axis.title.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.75points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.title.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.75points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.x.bottom NULL

\(axis.title.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] 90

$lineheight NULL

$margin [1] 0points 2.75points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.title.y.left NULL

\(axis.title.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle [1] -90

$lineheight NULL

$margin [1] 0points 0points 0points 2.75points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text\)family NULL

$face NULL

$colour [1] “grey30”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 2.2points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(axis.text.x.top\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust [1] 0

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 2.2points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.x.bottom NULL

\(axis.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 1

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.y.left NULL

\(axis.text.y.right\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.text.theta NULL

\(axis.text.r\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0.5

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 0points 2.2points 0points 2.2points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$axis.ticks list() attr(,“class”) [1] “element_blank” “element”

$axis.ticks.x NULL

$axis.ticks.x.top NULL

$axis.ticks.x.bottom NULL

$axis.ticks.y NULL

$axis.ticks.y.left NULL

$axis.ticks.y.right NULL

$axis.ticks.theta NULL

$axis.ticks.r NULL

$axis.minor.ticks.x.top NULL

$axis.minor.ticks.x.bottom NULL

$axis.minor.ticks.y.left NULL

$axis.minor.ticks.y.right NULL

$axis.minor.ticks.theta NULL

$axis.minor.ticks.r NULL

$axis.ticks.length [1] 2.75points

$axis.ticks.length.x NULL

$axis.ticks.length.x.top NULL

$axis.ticks.length.x.bottom NULL

$axis.ticks.length.y NULL

$axis.ticks.length.y.left NULL

$axis.ticks.length.y.right NULL

$axis.ticks.length.theta NULL

$axis.ticks.length.r NULL

$axis.minor.ticks.length [1] 0.75 *

$axis.minor.ticks.length.x NULL

$axis.minor.ticks.length.x.top NULL

$axis.minor.ticks.length.x.bottom NULL

$axis.minor.ticks.length.y NULL

$axis.minor.ticks.length.y.left NULL

$axis.minor.ticks.length.y.right NULL

$axis.minor.ticks.length.theta NULL

$axis.minor.ticks.length.r NULL

$axis.line list() attr(,“class”) [1] “element_blank” “element”

$axis.line.x NULL

$axis.line.x.top NULL

$axis.line.x.bottom NULL

$axis.line.y NULL

$axis.line.y.left NULL

$axis.line.y.right NULL

$axis.line.theta NULL

$axis.line.r NULL

$legend.background list() attr(,“class”) [1] “element_blank” “element”

$legend.margin [1] 5.5points 5.5points 5.5points 5.5points

$legend.spacing [1] 11points

$legend.spacing.x NULL

$legend.spacing.y NULL

$legend.key list() attr(,“class”) [1] “element_blank” “element”

$legend.key.size [1] 1.2lines

$legend.key.height NULL

$legend.key.width NULL

$legend.key.spacing [1] 5.5points

$legend.key.spacing.x NULL

$legend.key.spacing.y NULL

$legend.frame NULL

$legend.ticks NULL

$legend.ticks.length [1] 0.2 *

$legend.axis.line NULL

\(legend.text\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.text.position NULL

\(legend.title\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust NULL

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$legend.title.position NULL

$legend.position [1] “right”

$legend.position.inside NULL

$legend.direction NULL

$legend.byrow NULL

$legend.justification [1] “center”

$legend.justification.top NULL

$legend.justification.bottom NULL

$legend.justification.left NULL

$legend.justification.right NULL

$legend.justification.inside NULL

$legend.location NULL

$legend.box NULL

$legend.box.just NULL

$legend.box.margin [1] 0cm 0cm 0cm 0cm

$legend.box.background list() attr(,“class”) [1] “element_blank” “element”

$legend.box.spacing [1] 11points

$panel.background list() attr(,“class”) [1] “element_blank” “element”

$panel.border list() attr(,“class”) [1] “element_blank” “element”

$panel.spacing [1] 5.5points

$panel.spacing.x NULL

$panel.spacing.y NULL

\(panel.grid\)colour [1] “grey92”

$linewidth NULL

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major NULL

\(panel.grid.minor\)colour NULL

$linewidth [1] 0.5 *

$linetype NULL

$lineend NULL

$arrow [1] FALSE

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_line” “element”

$panel.grid.major.x NULL

$panel.grid.major.y NULL

$panel.grid.minor.x NULL

$panel.grid.minor.y NULL

$panel.ontop [1] FALSE

$plot.background list() attr(,“class”) [1] “element_blank” “element”

\(plot.title\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] FALSE

attr(,“class”) [1] “element_text” “element”

$plot.title.position [1] “panel”

\(plot.subtitle\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust [1] 0

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 0points 0points 5.5points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(plot.caption\)family NULL

$face NULL

$colour NULL

$size [1] 0.8 *

$hjust [1] 1

$vjust [1] 1

$angle NULL

$lineheight NULL

$margin [1] 5.5points 0points 0points 0points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.caption.position [1] “panel”

\(plot.tag\)family NULL

$face NULL

$colour NULL

$size [1] 1.2 *

$hjust [1] 0.5

$vjust [1] 0.5

$angle NULL

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$plot.tag.position [1] “topleft”

$plot.tag.location NULL

$plot.margin [1] 5.5points 5.5points 5.5points 5.5points

$strip.background list() attr(,“class”) [1] “element_blank” “element”

$strip.background.x NULL

$strip.background.y NULL

$strip.clip [1] “inherit”

$strip.placement [1] “inside”

\(strip.text\)family NULL

$face NULL

$colour [1] “grey10”

$size [1] 0.8 *

$hjust NULL

$vjust NULL

$angle NULL

$lineheight NULL

$margin [1] 4.4points 4.4points 4.4points 4.4points

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.x NULL

$strip.text.x.bottom NULL

$strip.text.x.top NULL

\(strip.text.y\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] -90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

\(strip.text.y.left\)family NULL

$face NULL

$colour NULL

$size NULL

$hjust NULL

$vjust NULL

$angle [1] 90

$lineheight NULL

$margin NULL

$debug NULL

$inherit.blank [1] TRUE

attr(,“class”) [1] “element_text” “element”

$strip.text.y.right NULL

$strip.switch.pad.grid [1] 2.75points

$strip.switch.pad.wrap [1] 2.75points

attr(,“class”) [1] “theme” “gg”
attr(,“complete”) [1] TRUE attr(,“validate”) [1] TRUE

$coordinates <ggproto object: Class CoordCartesian, Coord, gg> aspect: function backtransform_range: function clip: on default: FALSE distance: function draw_panel: function expand: FALSE is_free: function is_linear: function labels: function limits: list modify_scales: function range: function render_axis_h: function render_axis_v: function render_bg: function render_fg: function reverse: none setup_data: function setup_layout: function setup_panel_guides: function setup_panel_params: function setup_params: function train_panel_guides: function transform: function super: <ggproto object: Class CoordCartesian, Coord, gg>

$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x000002b95a673f20>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.00 [-0.19, 0.17] 50.05 4.70
Diet: Control vs CRA
Diet: Control vs CRA -0.02 [-0.21, 0.15] 56.90 4.50
Diet: Control vs CRV
Diet: Control vs CRV -0.01 [-0.20, 0.15] 56.60 4.85
Diet: CR25 vs CRA
Diet: CR25 vs CRA -0.02 [-0.20, 0.16] 57.70 5.25
Diet: CR25 vs CRV
Diet: CR25 vs CRV -0.02 [-0.20, 0.15] 57.25 5.25
Diet: CRA vs CRV
Diet: CRA vs CRV 0.00 [-0.18, 0.16] 50.10 4.70

No continuous ROPE effects available.

End of Document