Introduction

The results of the analysis are presented using the following structure:

  1. Searchable High‑Level Summary: Provides a brief overview of the key findings from our analysis with a table of effects
  2. Visualisation, Descriptive Statistics and Diagnostics by Variable: Exploratory data analysis and model diagnostics for each behavioral measure
  3. Searchable ROPE Analysis Table: Model diagnostics to check the fit of the models

Effects of Interest

  • Ambulatory measures and Distance Travelled all displayed meaningful session effects regardless of diet and gender
  • Females jumped more than Males across both sessions, regardless of diet
  • Control Females travelled further than CRV Females in Session 1
  • CRV Females spent less time ambulatory than Control Females in Session 1
  • Control Females made more zone entries than CR25, CRA AND CRV Females in Session 1

Note: Vertical variables were not reliably measured so inferences are not meaningful

Note: ID 637 Session 2 was not present in the data

Searchable High‑Level Summary

Enter search terms in the column headers to filter the table below

Note: TD in the Higher column indicates a Trend Difference for the continuous variable.

Visualisation, Descriptive Statistics and Diagnostics by Variable


Bar Plot

Density Plot

Ambulatory Time by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 97.1 36.2 41.0 194.0 0.0
Control F 24.0 113.1 35.4 47.0 176.0 0.0
CR25 M 24.0 102.8 37.7 34.0 190.0 0.0
CR25 F 24.0 102.6 35.0 54.0 165.0 0.0
CRA M 20.0 92.1 40.0 29.0 164.0 0.0
CRA F 20.0 104.0 35.4 64.0 202.0 0.0
CRV M 24.0 102.1 39.3 57.0 218.0 0.0
CRV F 23.0 102.7 25.0 51.0 165.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: negbinomial
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 5.133 0.152 4.840 5.438 Fixed Effects
shape_Intercept 3.908 1.075 1.971 6.193 Fixed Effects
DietCR25 0.014 0.202 −0.389 0.410 Fixed Effects
DietCRA −0.040 0.247 −0.525 0.449 Fixed Effects
DietCRV −0.258 0.203 −0.655 0.137 Fixed Effects
SexF 0.233 0.198 −0.160 0.621 Fixed Effects
Session −0.399 0.089 −0.578 −0.228 Fixed Effects
DietCR25:SexF −0.327 0.276 −0.866 0.221 Fixed Effects
DietCRA:SexF −0.137 0.308 −0.747 0.462 Fixed Effects
DietCRV:SexF −0.254 0.258 −0.759 0.263 Fixed Effects
DietCR25:Session 0.022 0.116 −0.203 0.256 Fixed Effects
DietCRA:Session −0.013 0.157 −0.322 0.298 Fixed Effects
DietCRV:Session 0.200 0.113 −0.021 0.422 Fixed Effects
SexF:Session −0.050 0.112 −0.267 0.176 Fixed Effects
DietCR25:SexF:Session 0.116 0.158 −0.201 0.422 Fixed Effects
DietCRA:SexF:Session 0.073 0.186 −0.293 0.440 Fixed Effects
DietCRV:SexF:Session 0.076 0.140 −0.202 0.347 Fixed Effects
shape_DietCR25 0.138 0.823 −1.465 1.765 Fixed Effects
shape_DietCRA 0.155 0.827 −1.444 1.754 Fixed Effects
shape_DietCRV −0.021 0.844 −1.638 1.673 Fixed Effects
shape_SexF 0.059 0.820 −1.555 1.654 Fixed Effects
shape_Session −0.172 0.638 −1.450 1.070 Fixed Effects
shape_DietCR25:SexF −0.423 0.873 −2.116 1.294 Fixed Effects
shape_DietCRA:SexF 0.225 0.909 −1.557 2.023 Fixed Effects
shape_DietCRV:SexF 0.527 0.912 −1.261 2.324 Fixed Effects
shape_DietCR25:Session 0.280 0.644 −0.937 1.614 Fixed Effects
shape_DietCRA:Session −0.609 0.571 −1.707 0.539 Fixed Effects
shape_DietCRV:Session 0.531 0.659 −0.721 1.867 Fixed Effects
shape_SexF:Session 0.439 0.636 −0.779 1.709 Fixed Effects
shape_DietCR25:SexF:Session −0.381 0.735 −1.821 1.049 Fixed Effects
shape_DietCRA:SexF:Session 0.473 0.749 −0.959 1.983 Fixed Effects
shape_DietCRV:SexF:Session 0.626 0.855 −0.998 2.352 Fixed Effects

Posterior Check

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Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.03 [-0.12, 0.19] 63.6 32.20
Diet: Control vs CRA
Diet: Control vs CRA 0.07 [-0.11, 0.24] 79.5 23.40
Diet: Control vs CRV
Diet: Control vs CRV 0.03 [-0.12, 0.20] 64.2 32.90
Diet: CR25 vs CRA
Diet: CR25 vs CRA 0.04 [-0.12, 0.22] 68.5 27.95
Diet: CR25 vs CRV
Diet: CR25 vs CRV 0.00 [-0.14, 0.16] 51.8 36.00
Diet: CRA vs CRV
Diet: CRA vs CRV -0.05 [-0.23, 0.12] 69.0 28.05
Sex: M vs F
Sex: M vs F -0.08 [-0.20, 0.04] 90.3 19.70

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F -0.15 [-0.48, 0.16] 83.05 11.90
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F -0.02 [-0.37, 0.34] 54.95 15.90
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F -0.14 [-0.47, 0.16] 79.70 12.05
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F 0.13 [-0.22, 0.48] 76.80 12.15
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F 0.01 [-0.29, 0.33] 53.05 18.85
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F -0.12 [-0.45, 0.22] 74.30 13.05

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F -0.05 [-0.28, 0.18] 65.70 21.80
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M 0.11 [-0.12, 0.32] 83.30 15.00
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F -0.07 [-0.30, 0.18] 72.45 21.00
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M 0.22 [-0.04, 0.46] 95.35 5.15
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F -0.06 [-0.29, 0.15] 70.15 21.10
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M 0.12 [-0.10, 0.35] 86.20 13.90
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F -0.02 [-0.26, 0.21] 58.15 24.55
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M 0.11 [-0.13, 0.39] 79.75 14.30
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F -0.01 [-0.22, 0.19] 54.30 27.75
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M 0.01 [-0.22, 0.25] 54.25 23.25
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F -0.13 [-0.36, 0.12] 83.25 14.20
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M 0.03 [-0.19, 0.27] 60.30 23.95

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 -0.34 [-0.40, -0.28] 100 0

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 4.73 [4.56, 4.92] 100.00 0.00
Session: Control, M 2 4.33 [4.15, 4.53] 100.00 0.00
Session: Control, M 1 - 2 -0.40 [-0.58, -0.23] 100.00 0.00
Session: CR25, M
Session: CR25, M 1 4.77 [4.60, 4.95] 100.00 0.00
Session: CR25, M 2 4.39 [4.22, 4.57] 100.00 0.00
Session: CR25, M 1 - 2 -0.38 [-0.52, -0.24] 100.00 0.05
Session: CRA, M
Session: CRA, M 1 4.68 [4.46, 4.90] 100.00 0.00
Session: CRA, M 2 4.27 [4.00, 4.57] 100.00 0.00
Session: CRA, M 1 - 2 -0.41 [-0.65, -0.13] 99.80 0.25
Session: CRV, M
Session: CRV, M 1 4.67 [4.50, 4.85] 100.00 0.00
Session: CRV, M 2 4.47 [4.31, 4.64] 100.00 0.00
Session: CRV, M 1 - 2 -0.20 [-0.35, -0.06] 99.75 0.95
Session: Control, F
Session: Control, F 1 4.92 [4.75, 5.08] 100.00 0.00
Session: Control, F 2 4.47 [4.30, 4.64] 100.00 0.00
Session: Control, F 1 - 2 -0.45 [-0.58, -0.31] 100.00 0.00
Session: CR25, F
Session: CR25, F 1 4.74 [4.55, 4.92] 100.00 0.00
Session: CR25, F 2 4.43 [4.23, 4.61] 100.00 0.00
Session: CR25, F 1 - 2 -0.31 [-0.49, -0.13] 99.95 0.20
Session: CRA, F
Session: CRA, F 1 4.80 [4.61, 4.97] 100.00 0.00
Session: CRA, F 2 4.41 [4.23, 4.60] 100.00 0.00
Session: CRA, F 1 - 2 -0.39 [-0.54, -0.24] 99.95 0.00
Session: CRV, F
Session: CRV, F 1 4.68 [4.54, 4.84] 100.00 0.00
Session: CRV, F 2 4.51 [4.35, 4.66] 100.00 0.00
Session: CRV, F 1 - 2 -0.17 [-0.27, -0.08] 100.00 0.45

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 -0.04 [-0.29, 0.21] 61.10 21.15
Session × Diet: Control, M - CR25, M 2 -0.06 [-0.30, 0.21] 67.45 19.05
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 0.05 [-0.23, 0.34] 63.35 20.35
Session × Diet: Control, M - CRA, M 2 0.07 [-0.29, 0.39] 65.05 14.95
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 0.06 [-0.18, 0.30] 66.90 20.00
Session × Diet: Control, M - CRV, M 2 -0.14 [-0.41, 0.09] 87.20 10.90
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 -0.18 [-0.43, 0.07] 92.95 7.45
Session × Sex: Control, M - Control, F 2 -0.14 [-0.40, 0.10] 85.80 13.20
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 -0.01 [-0.27, 0.24] 52.80 22.90
Session × Diet × Sex: Control, M - CR25, F 2 -0.10 [-0.36, 0.18] 76.50 15.60
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 -0.08 [-0.30, 0.20] 70.95 18.05
Session × Diet × Sex: Control, M - CRA, F 2 -0.08 [-0.34, 0.19] 71.40 17.70
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 0.05 [-0.19, 0.28] 66.10 21.95
Session × Diet × Sex: Control, M - CRV, F 2 -0.18 [-0.41, 0.08] 92.85 8.20
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 0.09 [-0.20, 0.37] 73.65 16.35
Session × Diet: CR25, M - CRA, M 2 0.12 [-0.21, 0.48] 76.85 13.90
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 0.10 [-0.16, 0.33] 76.95 17.30
Session × Diet: CR25, M - CRV, M 2 -0.09 [-0.32, 0.17] 75.55 17.40
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 -0.15 [-0.39, 0.11] 88.25 9.70
Session × Diet × Sex: CR25, M - Control, F 2 -0.08 [-0.31, 0.19] 73.50 16.90
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 0.02 [-0.21, 0.28] 58.10 23.65
Session × Sex: CR25, M - CR25, F 2 -0.04 [-0.28, 0.23] 61.85 21.70
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 -0.03 [-0.29, 0.23] 60.20 21.25
Session × Diet × Sex: CR25, M - CRA, F 2 -0.02 [-0.28, 0.24] 56.60 21.85
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 0.08 [-0.15, 0.32] 77.20 20.15
Session × Diet × Sex: CR25, M - CRV, F 2 -0.12 [-0.35, 0.10] 84.45 15.00
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 0.01 [-0.25, 0.31] 51.50 18.95
Session × Diet: CRA, M - CRV, M 2 -0.21 [-0.54, 0.13] 88.95 7.00
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 -0.24 [-0.52, 0.03] 95.20 5.00
Session × Diet × Sex: CRA, M - Control, F 2 -0.20 [-0.53, 0.14] 87.05 8.95
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 -0.06 [-0.33, 0.24] 67.65 17.45
Session × Diet × Sex: CRA, M - CR25, F 2 -0.16 [-0.52, 0.17] 81.75 9.60
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 -0.12 [-0.40, 0.16] 80.55 14.85
Session × Sex: CRA, M - CRA, F 2 -0.14 [-0.46, 0.21] 79.50 10.95
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 0.00 [-0.25, 0.27] 50.05 21.65
Session × Diet × Sex: CRA, M - CRV, F 2 -0.24 [-0.58, 0.08] 92.10 6.45
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 -0.25 [-0.49, -0.00] 97.45 3.70
Session × Diet × Sex: CRV, M - Control, F 2 0.00 [-0.24, 0.24] 51.60 22.95
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 -0.07 [-0.32, 0.19] 70.10 19.05
Session × Diet × Sex: CRV, M - CR25, F 2 0.05 [-0.19, 0.32] 63.65 19.85
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 -0.13 [-0.38, 0.13] 83.80 14.30
Session × Diet × Sex: CRV, M - CRA, F 2 0.06 [-0.20, 0.31] 69.30 19.55
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 -0.01 [-0.24, 0.22] 51.95 23.90
Session × Sex: CRV, M - CRV, F 2 -0.03 [-0.26, 0.19] 61.90 24.05
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 0.18 [-0.05, 0.44] 92.50 8.65
Session × Diet: Control, F - CR25, F 2 0.04 [-0.21, 0.30] 61.55 21.85
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 0.12 [-0.12, 0.37] 82.60 15.70
Session × Diet: Control, F - CRA, F 2 0.06 [-0.22, 0.30] 68.20 19.20
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 0.23 [0.01, 0.46] 97.85 3.50
Session × Diet: Control, F - CRV, F 2 -0.04 [-0.28, 0.18] 63.35 22.25
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 -0.06 [-0.34, 0.17] 68.00 19.60
Session × Diet: CR25, F - CRA, F 2 0.02 [-0.25, 0.28] 54.55 22.10
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 0.06 [-0.16, 0.32] 68.90 21.05
Session × Diet: CR25, F - CRV, F 2 -0.08 [-0.33, 0.16] 74.55 20.00
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 0.12 [-0.10, 0.36] 84.00 13.30
Session × Diet: CRA, F - CRV, F 2 -0.10 [-0.33, 0.13] 78.60 16.85

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 0.07 [-0.11, 0.24] 77.70 22.55
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 0.09 [-0.10, 0.28] 80.95 21.50
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 0.15 [-0.03, 0.32] 94.80 8.65
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 0.01 [-0.18, 0.22] 56.25 29.10
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 0.07 [-0.09, 0.27] 81.30 22.65
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 0.06 [-0.13, 0.24] 74.25 23.75
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 -0.01 [-0.19, 0.17] 54.15 30.15
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 0.06 [-0.16, 0.26] 71.60 20.75
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 -0.09 [-0.26, 0.09] 86.05 19.65
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 0.07 [-0.13, 0.30] 74.35 21.95
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 -0.08 [-0.26, 0.09] 81.95 20.40
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 -0.16 [-0.34, 0.06] 92.40 9.90
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 -0.07 [-0.20, 0.06] 86.50 23.00
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 -0.09 [-0.23, 0.05] 89.60 18.40

Bar Plot

Density Plot

Ambulatory Count by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 2,106.2 842.6 789.0 4,784.0 0.0
Control F 24.0 2,499.8 739.3 1,128.0 3,966.0 0.0
CR25 M 24.0 2,214.9 805.6 685.0 3,975.0 0.0
CR25 F 24.0 2,254.7 791.3 1,107.0 3,641.0 0.0
CRA M 20.0 1,992.3 826.4 574.0 3,455.0 0.0
CRA F 20.0 2,256.4 763.4 1,352.0 4,191.0 0.0
CRV M 24.0 2,244.4 898.5 1,299.0 4,841.0 0.0
CRV F 23.0 2,254.6 565.9 973.0 3,460.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: negbinomial
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 8.141 0.151 7.847 8.451 Fixed Effects
shape_Intercept 4.144 0.950 2.401 6.167 Fixed Effects
DietCR25 0.035 0.205 −0.372 0.439 Fixed Effects
DietCRA 0.020 0.254 −0.486 0.523 Fixed Effects
DietCRV −0.249 0.203 −0.645 0.152 Fixed Effects
SexF 0.248 0.207 −0.169 0.656 Fixed Effects
Session −0.358 0.090 −0.538 −0.180 Fixed Effects
DietCR25:SexF −0.325 0.286 −0.888 0.240 Fixed Effects
DietCRA:SexF −0.136 0.320 −0.770 0.490 Fixed Effects
DietCRV:SexF −0.270 0.275 −0.804 0.278 Fixed Effects
DietCR25:Session 0.006 0.120 −0.232 0.247 Fixed Effects
DietCRA:Session −0.050 0.170 −0.379 0.291 Fixed Effects
DietCRV:Session 0.204 0.115 −0.020 0.431 Fixed Effects
SexF:Session −0.037 0.123 −0.277 0.210 Fixed Effects
DietCR25:SexF:Session 0.102 0.168 −0.230 0.436 Fixed Effects
DietCRA:SexF:Session 0.053 0.203 −0.355 0.449 Fixed Effects
DietCRV:SexF:Session 0.064 0.154 −0.240 0.366 Fixed Effects
shape_DietCR25 0.113 0.810 −1.452 1.701 Fixed Effects
shape_DietCRA 0.258 0.819 −1.349 1.874 Fixed Effects
shape_DietCRV −0.070 0.824 −1.669 1.561 Fixed Effects
shape_SexF −0.084 0.804 −1.670 1.509 Fixed Effects
shape_Session −0.628 0.552 −1.745 0.426 Fixed Effects
shape_DietCR25:SexF −0.138 0.845 −1.782 1.521 Fixed Effects
shape_DietCRA:SexF 0.233 0.864 −1.462 1.932 Fixed Effects
shape_DietCRV:SexF 0.230 0.850 −1.430 1.920 Fixed Effects
shape_DietCR25:Session 0.088 0.538 −0.964 1.154 Fixed Effects
shape_DietCRA:Session −0.588 0.513 −1.587 0.416 Fixed Effects
shape_DietCRV:Session 0.364 0.571 −0.726 1.495 Fixed Effects
shape_SexF:Session 0.136 0.545 −0.941 1.218 Fixed Effects
shape_DietCR25:SexF:Session 0.046 0.627 −1.181 1.295 Fixed Effects
shape_DietCRA:SexF:Session 0.536 0.636 −0.681 1.807 Fixed Effects
shape_DietCRV:SexF:Session 0.063 0.654 −1.194 1.374 Fixed Effects

Posterior Check

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Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.04 [-0.12, 0.23] 67.50 30.95
Diet: Control vs CRA
Diet: Control vs CRA 0.08 [-0.12, 0.29] 78.20 22.10
Diet: Control vs CRV
Diet: Control vs CRV 0.04 [-0.14, 0.20] 64.70 29.10
Diet: CR25 vs CRA
Diet: CR25 vs CRA 0.04 [-0.16, 0.23] 64.95 29.30
Diet: CR25 vs CRV
Diet: CR25 vs CRV -0.01 [-0.18, 0.16] 53.75 34.40
Diet: CRA vs CRV
Diet: CRA vs CRV -0.05 [-0.23, 0.13] 68.55 26.05
Sex: M vs F
Sex: M vs F -0.09 [-0.23, 0.03] 92.05 18.50

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F -0.17 [-0.51, 0.18] 82.00 10.90
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F -0.06 [-0.45, 0.33] 61.70 15.40
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F -0.17 [-0.53, 0.16] 83.20 10.65
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F 0.11 [-0.33, 0.44] 71.10 12.30
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F -0.01 [-0.35, 0.34] 51.40 16.95
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F -0.10 [-0.50, 0.24] 73.35 12.65

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F -0.07 [-0.31, 0.20] 68.90 19.45
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M 0.15 [-0.07, 0.41] 89.00 12.15
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F -0.08 [-0.34, 0.20] 72.45 18.50
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M 0.24 [-0.05, 0.52] 95.45 5.10
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F -0.07 [-0.32, 0.16] 72.65 21.20
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M 0.14 [-0.13, 0.37] 86.60 14.15
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F -0.04 [-0.30, 0.23] 62.55 22.45
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M 0.12 [-0.15, 0.42] 79.45 16.10
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F -0.03 [-0.30, 0.19] 60.05 24.50
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M 0.02 [-0.21, 0.26] 55.50 23.95
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F -0.12 [-0.41, 0.15] 80.70 14.15
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M 0.03 [-0.21, 0.31] 59.50 23.50

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 -0.31 [-0.37, -0.24] 100 0

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 7.78 [7.60, 7.97] 100.00 0.00
Session: Control, M 2 7.43 [7.23, 7.64] 100.00 0.00
Session: Control, M 1 - 2 -0.36 [-0.54, -0.19] 99.95 0.05
Session: CR25, M
Session: CR25, M 1 7.83 [7.66, 8.01] 100.00 0.00
Session: CR25, M 2 7.47 [7.27, 7.67] 100.00 0.00
Session: CR25, M 1 - 2 -0.36 [-0.54, -0.21] 100.00 0.05
Session: CRA, M
Session: CRA, M 1 7.75 [7.53, 7.97] 100.00 0.00
Session: CRA, M 2 7.35 [7.07, 7.71] 100.00 0.00
Session: CRA, M 1 - 2 -0.41 [-0.73, -0.13] 98.85 0.90
Session: CRV, M
Session: CRV, M 1 7.74 [7.56, 7.93] 100.00 0.00
Session: CRV, M 2 7.58 [7.38, 7.77] 100.00 0.00
Session: CRV, M 1 - 2 -0.15 [-0.29, 0.00] 98.45 4.80
Session: Control, F
Session: Control, F 1 7.99 [7.82, 8.18] 100.00 0.00
Session: Control, F 2 7.60 [7.40, 7.81] 100.00 0.00
Session: Control, F 1 - 2 -0.40 [-0.57, -0.22] 100.00 0.00
Session: CR25, F
Session: CR25, F 1 7.81 [7.63, 7.99] 100.00 0.00
Session: CR25, F 2 7.53 [7.32, 7.73] 100.00 0.00
Session: CR25, F 1 - 2 -0.29 [-0.46, -0.11] 99.85 0.55
Session: CRA, F
Session: CRA, F 1 7.88 [7.67, 8.07] 100.00 0.00
Session: CRA, F 2 7.49 [7.28, 7.71] 100.00 0.00
Session: CRA, F 1 - 2 -0.39 [-0.54, -0.23] 100.00 0.05
Session: CRV, F
Session: CRV, F 1 7.74 [7.58, 7.92] 100.00 0.00
Session: CRV, F 2 7.62 [7.44, 7.80] 100.00 0.00
Session: CRV, F 1 - 2 -0.13 [-0.25, -0.01] 98.05 5.85

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 -0.05 [-0.31, 0.19] 62.60 19.95
Session × Diet: Control, M - CR25, M 2 -0.04 [-0.31, 0.26] 61.80 20.25
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 0.03 [-0.26, 0.32] 58.45 20.25
Session × Diet: Control, M - CRA, M 2 0.08 [-0.26, 0.49] 66.25 14.60
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 0.04 [-0.23, 0.30] 61.70 20.45
Session × Diet: Control, M - CRV, M 2 -0.16 [-0.44, 0.12] 86.75 10.10
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 -0.21 [-0.47, 0.04] 94.75 6.45
Session × Sex: Control, M - Control, F 2 -0.17 [-0.45, 0.13] 88.30 9.15
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 -0.03 [-0.30, 0.22] 58.80 22.65
Session × Diet × Sex: Control, M - CR25, F 2 -0.10 [-0.38, 0.21] 74.70 15.95
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 -0.10 [-0.35, 0.19] 78.00 16.40
Session × Diet × Sex: Control, M - CRA, F 2 -0.07 [-0.36, 0.24] 66.60 17.30
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 0.04 [-0.21, 0.28] 61.85 21.75
Session × Diet × Sex: Control, M - CRV, F 2 -0.19 [-0.46, 0.09] 91.20 8.90
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 0.08 [-0.20, 0.36] 69.25 16.85
Session × Diet: CR25, M - CRA, M 2 0.12 [-0.25, 0.48] 75.25 13.85
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 0.09 [-0.18, 0.34] 76.25 17.65
Session × Diet: CR25, M - CRV, M 2 -0.11 [-0.37, 0.16] 79.45 16.90
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 -0.17 [-0.42, 0.10] 89.20 9.20
Session × Diet × Sex: CR25, M - Control, F 2 -0.13 [-0.39, 0.17] 81.00 12.40
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 0.02 [-0.25, 0.26] 55.75 20.75
Session × Sex: CR25, M - CR25, F 2 -0.05 [-0.32, 0.27] 63.75 17.95
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 -0.05 [-0.35, 0.18] 65.15 19.70
Session × Diet × Sex: CR25, M - CRA, F 2 -0.02 [-0.32, 0.27] 55.65 20.65
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 0.09 [-0.17, 0.32] 74.35 20.00
Session × Diet × Sex: CR25, M - CRV, F 2 -0.15 [-0.40, 0.13] 86.15 13.05
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 0.01 [-0.28, 0.30] 53.45 20.45
Session × Diet: CRA, M - CRV, M 2 -0.24 [-0.58, 0.14] 90.35 5.80
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 -0.24 [-0.55, 0.03] 95.65 5.10
Session × Diet × Sex: CRA, M - Control, F 2 -0.25 [-0.66, 0.10] 90.50 6.10
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 -0.06 [-0.33, 0.26] 65.35 17.20
Session × Diet × Sex: CRA, M - CR25, F 2 -0.18 [-0.56, 0.20] 83.10 10.10
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 -0.13 [-0.44, 0.16] 79.90 12.90
Session × Sex: CRA, M - CRA, F 2 -0.15 [-0.52, 0.22] 77.60 12.10
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 0.01 [-0.28, 0.28] 52.30 20.75
Session × Diet × Sex: CRA, M - CRV, F 2 -0.27 [-0.64, 0.08] 92.20 6.25
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 -0.26 [-0.50, 0.02] 97.30 3.95
Session × Diet × Sex: CRV, M - Control, F 2 -0.02 [-0.30, 0.26] 55.40 20.25
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 -0.07 [-0.33, 0.21] 68.80 18.60
Session × Diet × Sex: CRV, M - CR25, F 2 0.06 [-0.23, 0.32] 66.40 20.15
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 -0.14 [-0.44, 0.12] 84.90 11.55
Session × Diet × Sex: CRV, M - CRA, F 2 0.10 [-0.19, 0.38] 74.00 15.35
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 0.00 [-0.24, 0.27] 51.10 22.15
Session × Sex: CRV, M - CRV, F 2 -0.03 [-0.29, 0.22] 59.10 21.95
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 0.18 [-0.08, 0.45] 92.25 8.05
Session × Diet: Control, F - CR25, F 2 0.07 [-0.23, 0.36] 69.25 17.75
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 0.11 [-0.14, 0.39] 79.90 15.35
Session × Diet: Control, F - CRA, F 2 0.11 [-0.16, 0.42] 77.35 15.65
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 0.25 [0.01, 0.50] 97.60 3.55
Session × Diet: Control, F - CRV, F 2 -0.02 [-0.30, 0.24] 54.70 20.75
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 -0.07 [-0.34, 0.21] 70.35 18.40
Session × Diet: CR25, F - CRA, F 2 0.03 [-0.27, 0.33] 58.45 18.80
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 0.07 [-0.17, 0.34] 69.85 19.40
Session × Diet: CR25, F - CRV, F 2 -0.09 [-0.37, 0.19] 74.85 17.40
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 0.13 [-0.12, 0.41] 84.80 12.80
Session × Diet: CRA, F - CRV, F 2 -0.13 [-0.40, 0.15] 81.15 13.60

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 0.07 [-0.12, 0.25] 77.45 23.15
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 0.07 [-0.12, 0.26] 75.80 21.10
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 0.15 [-0.03, 0.33] 94.40 9.95
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 0.00 [-0.19, 0.19] 51.05 28.20
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 0.08 [-0.09, 0.27] 79.95 21.00
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 0.07 [-0.13, 0.27] 78.50 22.40
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 0.02 [-0.19, 0.21] 56.15 27.70
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 0.09 [-0.12, 0.35] 77.55 18.05
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 -0.09 [-0.27, 0.11] 80.65 22.30
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 0.08 [-0.16, 0.33] 75.50 20.30
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 -0.10 [-0.30, 0.10] 85.80 18.75
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 -0.18 [-0.39, 0.05] 94.25 8.25
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 -0.08 [-0.20, 0.06] 87.85 22.50
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 -0.10 [-0.27, 0.04] 90.55 17.70

Bar Plot

Density Plot

Ambulatory Episodes by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 175.1 62.9 70.0 326.0 0.0
Control F 24.0 195.0 57.6 79.0 286.0 0.0
CR25 M 24.0 181.9 61.3 68.0 306.0 0.0
CR25 F 24.0 173.2 59.6 84.0 272.0 0.0
CRA M 20.0 161.7 66.9 48.0 274.0 0.0
CRA F 20.0 172.9 59.3 115.0 350.0 0.0
CRV M 24.0 176.4 58.5 117.0 371.0 0.0
CRV F 23.0 173.3 41.8 77.0 273.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: negbinomial
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 5.747 0.139 5.476 6.027 Fixed Effects
shape_Intercept 4.440 1.041 2.558 6.627 Fixed Effects
DietCR25 −0.021 0.186 −0.387 0.342 Fixed Effects
DietCRA −0.038 0.234 −0.501 0.432 Fixed Effects
DietCRV −0.330 0.185 −0.700 0.034 Fixed Effects
SexF 0.129 0.188 −0.244 0.498 Fixed Effects
Session −0.416 0.084 −0.580 −0.250 Fixed Effects
DietCR25:SexF −0.278 0.271 −0.822 0.254 Fixed Effects
DietCRA:SexF −0.169 0.296 −0.762 0.404 Fixed Effects
DietCRV:SexF −0.203 0.247 −0.685 0.284 Fixed Effects
DietCR25:Session 0.037 0.108 −0.173 0.251 Fixed Effects
DietCRA:Session −0.028 0.161 −0.346 0.287 Fixed Effects
DietCRV:Session 0.232 0.107 0.022 0.441 Fixed Effects
SexF:Session −0.003 0.112 −0.224 0.216 Fixed Effects
DietCR25:SexF:Session 0.072 0.160 −0.238 0.387 Fixed Effects
DietCRA:SexF:Session 0.077 0.190 −0.294 0.456 Fixed Effects
DietCRV:SexF:Session 0.038 0.139 −0.232 0.312 Fixed Effects
shape_DietCR25 −0.011 0.831 −1.625 1.631 Fixed Effects
shape_DietCRA 0.255 0.838 −1.385 1.901 Fixed Effects
shape_DietCRV −0.016 0.835 −1.632 1.619 Fixed Effects
shape_SexF −0.099 0.806 −1.678 1.493 Fixed Effects
shape_Session −0.552 0.605 −1.764 0.636 Fixed Effects
shape_DietCR25:SexF −0.473 0.864 −2.144 1.226 Fixed Effects
shape_DietCRA:SexF 0.375 0.888 −1.327 2.140 Fixed Effects
shape_DietCRV:SexF 0.403 0.886 −1.328 2.168 Fixed Effects
shape_DietCR25:Session 0.392 0.608 −0.776 1.618 Fixed Effects
shape_DietCRA:Session −0.661 0.540 −1.722 0.393 Fixed Effects
shape_DietCRV:Session 0.398 0.615 −0.775 1.663 Fixed Effects
shape_SexF:Session 0.197 0.563 −0.900 1.334 Fixed Effects
shape_DietCR25:SexF:Session −0.265 0.679 −1.597 1.071 Fixed Effects
shape_DietCRA:SexF:Session 0.773 0.688 −0.535 2.158 Fixed Effects
shape_DietCRV:SexF:Session 0.433 0.765 −0.995 2.022 Fixed Effects

Posterior Check

$data # A tibble: 2,013 × 7 y_id y_name rep_id rep_label is_y is_y_label value 1 1 1 1 italic(y)[rep] ( 1 ) FALSE italic(y)[rep] 271 2 1 1 2 italic(y)[rep] ( 2 ) FALSE italic(y)[rep] 200 3 1 1 3 italic(y)[rep] ( 3 ) FALSE italic(y)[rep] 205 4 1 1 4 italic(y)[rep] ( 4 ) FALSE italic(y)[rep] 199 5 1 1 5 italic(y)[rep] ( 5 ) FALSE italic(y)[rep] 213 6 1 1 6 italic(y)[rep] ( 6 ) FALSE italic(y)[rep] 224 7 1 1 7 italic(y)[rep] ( 7 ) FALSE italic(y)[rep] 138 8 1 1 8 italic(y)[rep] ( 8 ) FALSE italic(y)[rep] 325 9 1 1 9 italic(y)[rep] ( 9 ) FALSE italic(y)[rep] 215 10 1 1 10 italic(y)[rep] ( 10 ) FALSE italic(y)[rep] 151 # ℹ 2,003 more rows

\(layers\)layers[[1]] mapping: group = ~.data$rep_id, colour = yrep geom_line: na.rm = FALSE, orientation = NA stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

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$guides <Guides[0] ggproto object>

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Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.05 [-0.11, 0.20] 73.85 29.75
Diet: Control vs CRA
Diet: Control vs CRA 0.11 [-0.05, 0.30] 90.70 13.40
Diet: Control vs CRV
Diet: Control vs CRV 0.06 [-0.09, 0.21] 77.10 26.70
Diet: CR25 vs CRA
Diet: CR25 vs CRA 0.06 [-0.11, 0.23] 76.70 24.20
Diet: CR25 vs CRV
Diet: CR25 vs CRV 0.01 [-0.14, 0.17] 55.70 35.20
Diet: CRA vs CRV
Diet: CRA vs CRV -0.05 [-0.22, 0.11] 74.10 25.35
Sex: M vs F
Sex: M vs F -0.03 [-0.15, 0.08] 71.15 39.45

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F -0.17 [-0.50, 0.12] 86.25 10.05
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F -0.05 [-0.39, 0.30] 61.50 16.10
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F -0.14 [-0.45, 0.16] 82.10 11.45
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F 0.12 [-0.24, 0.46] 75.00 13.45
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F 0.03 [-0.28, 0.32] 57.45 19.15
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F -0.09 [-0.40, 0.27] 71.05 12.95

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F 0.01 [-0.20, 0.24] 53.75 23.70
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M 0.09 [-0.13, 0.31] 77.95 18.65
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F 0.01 [-0.22, 0.23] 55.15 22.95
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M 0.21 [-0.04, 0.48] 94.20 6.50
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F 0.01 [-0.22, 0.21] 53.05 27.30
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M 0.11 [-0.12, 0.32] 83.50 14.60
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F 0.05 [-0.17, 0.28] 67.50 21.85
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M 0.08 [-0.21, 0.31] 72.10 17.90
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F 0.04 [-0.16, 0.27] 64.40 23.55
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M -0.02 [-0.26, 0.20] 57.75 24.20
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F -0.08 [-0.31, 0.19] 75.00 17.20
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M -0.03 [-0.25, 0.18] 60.70 24.35

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 -0.33 [-0.39, -0.28] 100 0

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 5.33 [5.16, 5.49] 100.00 0.00
Session: Control, M 2 4.91 [4.73, 5.10] 100.00 0.00
Session: Control, M 1 - 2 -0.42 [-0.57, -0.24] 100.00 0.00
Session: CR25, M
Session: CR25, M 1 5.34 [5.19, 5.52] 100.00 0.00
Session: CR25, M 2 4.96 [4.81, 5.13] 100.00 0.00
Session: CR25, M 1 - 2 -0.38 [-0.51, -0.25] 100.00 0.00
Session: CRA, M
Session: CRA, M 1 5.26 [5.06, 5.47] 100.00 0.00
Session: CRA, M 2 4.82 [4.53, 5.10] 100.00 0.00
Session: CRA, M 1 - 2 -0.44 [-0.72, -0.18] 99.85 0.20
Session: CRV, M
Session: CRV, M 1 5.24 [5.08, 5.42] 100.00 0.00
Session: CRV, M 2 5.05 [4.88, 5.21] 100.00 0.00
Session: CRV, M 1 - 2 -0.19 [-0.33, -0.05] 99.70 1.45
Session: Control, F
Session: Control, F 1 5.46 [5.29, 5.61] 100.00 0.00
Session: Control, F 2 5.04 [4.85, 5.22] 100.00 0.00
Session: Control, F 1 - 2 -0.42 [-0.56, -0.27] 100.00 0.00
Session: CR25, F
Session: CR25, F 1 5.27 [5.06, 5.43] 100.00 0.00
Session: CR25, F 2 4.95 [4.76, 5.14] 100.00 0.00
Session: CR25, F 1 - 2 -0.31 [-0.50, -0.13] 99.80 0.15
Session: CRA, F
Session: CRA, F 1 5.30 [5.13, 5.47] 100.00 0.00
Session: CRA, F 2 4.92 [4.74, 5.09] 100.00 0.00
Session: CRA, F 1 - 2 -0.37 [-0.51, -0.25] 100.00 0.05
Session: CRV, F
Session: CRV, F 1 5.19 [5.04, 5.35] 100.00 0.00
Session: CRV, F 2 5.04 [4.89, 5.19] 100.00 0.00
Session: CRV, F 1 - 2 -0.15 [-0.24, -0.05] 99.85 0.75

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 -0.02 [-0.24, 0.21] 55.00 23.05
Session × Diet: Control, M - CR25, M 2 -0.05 [-0.30, 0.19] 66.00 20.05
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 0.06 [-0.20, 0.33] 70.35 20.00
Session × Diet: Control, M - CRA, M 2 0.09 [-0.24, 0.43] 71.25 14.25
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 0.09 [-0.11, 0.36] 78.10 17.35
Session × Diet: Control, M - CRV, M 2 -0.13 [-0.40, 0.10] 85.65 14.05
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 -0.13 [-0.37, 0.10] 85.25 12.10
Session × Sex: Control, M - Control, F 2 -0.13 [-0.39, 0.12] 82.35 14.65
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 0.06 [-0.17, 0.32] 68.90 20.40
Session × Diet × Sex: Control, M - CR25, F 2 -0.04 [-0.31, 0.22] 59.95 18.65
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 0.03 [-0.20, 0.26] 60.25 22.60
Session × Diet × Sex: Control, M - CRA, F 2 -0.01 [-0.27, 0.25] 52.35 20.35
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 0.14 [-0.09, 0.36] 88.40 11.85
Session × Diet × Sex: Control, M - CRV, F 2 -0.13 [-0.38, 0.11] 85.00 12.55
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 0.08 [-0.18, 0.33] 72.95 17.45
Session × Diet: CR25, M - CRA, M 2 0.15 [-0.20, 0.44] 81.25 10.55
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 0.11 [-0.14, 0.34] 82.50 15.00
Session × Diet: CR25, M - CRV, M 2 -0.08 [-0.34, 0.13] 75.95 18.20
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 -0.11 [-0.34, 0.13] 83.45 14.55
Session × Diet × Sex: CR25, M - Control, F 2 -0.07 [-0.33, 0.15] 72.85 19.65
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 0.08 [-0.18, 0.31] 74.90 16.30
Session × Sex: CR25, M - CR25, F 2 0.01 [-0.25, 0.27] 53.55 20.85
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 0.05 [-0.19, 0.27] 66.35 20.45
Session × Diet × Sex: CR25, M - CRA, F 2 0.04 [-0.20, 0.27] 63.35 21.80
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 0.15 [-0.08, 0.38] 90.75 11.20
Session × Diet × Sex: CR25, M - CRV, F 2 -0.08 [-0.31, 0.15] 76.50 18.65
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 0.03 [-0.24, 0.28] 58.15 21.15
Session × Diet: CRA, M - CRV, M 2 -0.23 [-0.56, 0.11] 91.10 7.10
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 -0.19 [-0.45, 0.07] 92.90 7.80
Session × Diet × Sex: CRA, M - Control, F 2 -0.22 [-0.57, 0.14] 89.45 6.85
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 0.00 [-0.24, 0.31] 50.95 21.25
Session × Diet × Sex: CRA, M - CR25, F 2 -0.13 [-0.49, 0.22] 78.80 12.35
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 -0.04 [-0.29, 0.24] 60.15 18.85
Session × Sex: CRA, M - CRA, F 2 -0.11 [-0.47, 0.20] 73.20 13.00
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 0.07 [-0.17, 0.36] 69.75 18.30
Session × Diet × Sex: CRA, M - CRV, F 2 -0.22 [-0.54, 0.11] 90.90 6.55
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 -0.22 [-0.45, 0.02] 96.15 4.30
Session × Diet × Sex: CRV, M - Control, F 2 0.01 [-0.23, 0.27] 54.30 22.50
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 -0.03 [-0.30, 0.19] 58.95 21.25
Session × Diet × Sex: CRV, M - CR25, F 2 0.10 [-0.15, 0.37] 77.80 16.00
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 -0.06 [-0.31, 0.16] 69.40 19.30
Session × Diet × Sex: CRV, M - CRA, F 2 0.12 [-0.12, 0.39] 84.70 14.30
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 0.04 [-0.17, 0.27] 64.20 21.90
Session × Sex: CRV, M - CRV, F 2 0.01 [-0.20, 0.24] 52.20 25.30
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 0.19 [-0.08, 0.41] 93.70 6.95
Session × Diet: Control, F - CR25, F 2 0.09 [-0.17, 0.36] 74.75 16.75
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 0.16 [-0.07, 0.41] 90.95 9.50
Session × Diet: Control, F - CRA, F 2 0.11 [-0.14, 0.36] 81.70 14.85
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 0.27 [0.03, 0.50] 98.70 2.00
Session × Diet: Control, F - CRV, F 2 0.00 [-0.24, 0.24] 50.75 21.85
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 -0.03 [-0.30, 0.20] 60.70 22.85
Session × Diet: CR25, F - CRA, F 2 0.03 [-0.26, 0.30] 57.35 21.45
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 0.07 [-0.18, 0.29] 72.55 19.50
Session × Diet: CR25, F - CRV, F 2 -0.09 [-0.36, 0.15] 76.25 17.25
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 0.10 [-0.12, 0.35] 81.45 16.90
Session × Diet: CRA, F - CRV, F 2 -0.12 [-0.35, 0.13] 83.35 14.55

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 0.09 [-0.08, 0.25] 85.15 19.50
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 0.11 [-0.06, 0.30] 89.25 13.90
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 0.18 [0.02, 0.36] 97.75 4.05
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 0.02 [-0.15, 0.21] 59.45 28.90
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 0.09 [-0.08, 0.26] 86.00 19.35
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 0.07 [-0.12, 0.23] 77.50 23.25
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 0.02 [-0.15, 0.21] 58.05 28.45
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 0.11 [-0.12, 0.31] 83.10 16.70
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 -0.07 [-0.25, 0.10] 78.50 23.55
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 0.09 [-0.12, 0.30] 79.35 18.65
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 -0.09 [-0.26, 0.09] 83.65 19.35
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 -0.17 [-0.38, 0.03] 94.75 7.35
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 -0.01 [-0.12, 0.12] 56.30 42.80
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 -0.05 [-0.19, 0.09] 77.40 29.50

Bar Plot

Density Plot

Entries by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 260.6 96.6 109.0 488.0 0.0
Control F 24.0 265.5 88.8 99.0 425.0 0.0
CR25 M 24.0 260.7 107.1 62.0 434.0 0.0
CR25 F 24.0 221.5 87.9 90.0 408.0 0.0
CRA M 20.0 225.2 95.4 42.0 361.0 0.0
CRA F 20.0 208.1 83.2 112.0 433.0 0.0
CRV M 24.0 227.2 77.5 109.0 383.0 0.0
CRV F 23.0 222.6 65.6 78.0 401.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: negbinomial
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 6.122 0.166 5.796 6.454 Fixed Effects
shape_Intercept 4.011 0.907 2.373 5.932 Fixed Effects
DietCR25 0.053 0.248 −0.439 0.548 Fixed Effects
DietCRA −0.149 0.266 −0.674 0.368 Fixed Effects
DietCRV −0.427 0.228 −0.877 0.023 Fixed Effects
SexF 0.026 0.224 −0.404 0.469 Fixed Effects
Session −0.400 0.104 −0.603 −0.192 Fixed Effects
DietCR25:SexF −0.413 0.333 −1.072 0.228 Fixed Effects
DietCRA:SexF −0.161 0.344 −0.839 0.516 Fixed Effects
DietCRV:SexF −0.089 0.306 −0.696 0.501 Fixed Effects
DietCR25:Session −0.044 0.153 −0.346 0.260 Fixed Effects
DietCRA:Session −0.006 0.183 −0.363 0.360 Fixed Effects
DietCRV:Session 0.199 0.139 −0.078 0.476 Fixed Effects
SexF:Session 0.001 0.138 −0.275 0.266 Fixed Effects
DietCR25:SexF:Session 0.146 0.202 −0.250 0.553 Fixed Effects
DietCRA:SexF:Session 0.042 0.228 −0.408 0.486 Fixed Effects
DietCRV:SexF:Session 0.020 0.183 −0.333 0.383 Fixed Effects
shape_DietCR25 −0.470 0.794 −2.022 1.075 Fixed Effects
shape_DietCRA 0.490 0.830 −1.124 2.136 Fixed Effects
shape_DietCRV 0.060 0.825 −1.517 1.711 Fixed Effects
shape_SexF −0.167 0.784 −1.686 1.390 Fixed Effects
shape_Session −0.664 0.535 −1.762 0.353 Fixed Effects
shape_DietCR25:SexF −0.205 0.825 −1.811 1.437 Fixed Effects
shape_DietCRA:SexF 0.274 0.862 −1.416 1.976 Fixed Effects
shape_DietCRV:SexF 0.046 0.847 −1.620 1.725 Fixed Effects
shape_DietCR25:Session 0.192 0.534 −0.846 1.239 Fixed Effects
shape_DietCRA:Session −0.639 0.515 −1.655 0.372 Fixed Effects
shape_DietCRV:Session 0.172 0.564 −0.905 1.302 Fixed Effects
shape_SexF:Session 0.224 0.528 −0.807 1.243 Fixed Effects
shape_DietCR25:SexF:Session 0.242 0.627 −0.959 1.492 Fixed Effects
shape_DietCRA:SexF:Session 0.265 0.618 −0.935 1.492 Fixed Effects
shape_DietCRV:SexF:Session 0.127 0.651 −1.125 1.419 Fixed Effects

Posterior Check

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Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.11 [-0.08, 0.31] 86.90 17.90
Diet: Control vs CRA
Diet: Control vs CRA 0.21 [-0.01, 0.40] 97.65 4.85
Diet: Control vs CRV
Diet: Control vs CRV 0.16 [-0.02, 0.35] 95.55 8.65
Diet: CR25 vs CRA
Diet: CR25 vs CRA 0.09 [-0.11, 0.31] 81.10 19.35
Diet: CR25 vs CRV
Diet: CR25 vs CRV 0.05 [-0.14, 0.23] 68.55 30.20
Diet: CRA vs CRV
Diet: CRA vs CRV -0.05 [-0.25, 0.14] 68.65 28.20
Sex: M vs F
Sex: M vs F 0.06 [-0.08, 0.20] 80.65 31.40

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F -0.20 [-0.55, 0.21] 84.20 9.15
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F -0.10 [-0.47, 0.33] 68.35 14.95
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F -0.05 [-0.40, 0.32] 62.40 17.90
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F 0.09 [-0.37, 0.47] 67.40 13.95
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F 0.14 [-0.23, 0.51] 76.60 14.05
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F 0.05 [-0.35, 0.44] 58.80 15.85

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F 0.18 [-0.08, 0.46] 91.00 10.75
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M 0.04 [-0.25, 0.30] 61.55 22.90
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F 0.23 [-0.03, 0.51] 95.55 5.75
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M 0.19 [-0.14, 0.46] 87.80 9.00
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F 0.16 [-0.11, 0.40] 90.10 12.80
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M 0.16 [-0.10, 0.43] 88.25 12.60
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F 0.22 [-0.06, 0.50] 93.35 7.60
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M -0.03 [-0.34, 0.28] 57.00 19.85
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F 0.15 [-0.13, 0.40] 86.25 14.80
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M -0.05 [-0.32, 0.23] 65.10 21.75
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F 0.00 [-0.29, 0.30] 50.20 21.20
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M -0.10 [-0.38, 0.16] 76.30 18.55

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 -0.34 [-0.41, -0.26] 100 0

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 5.72 [5.52, 5.91] 100.00 0.00
Session: Control, M 2 5.32 [5.10, 5.56] 100.00 0.00
Session: Control, M 1 - 2 -0.40 [-0.60, -0.18] 100.00 0.10
Session: CR25, M
Session: CR25, M 1 5.73 [5.51, 5.94] 100.00 0.00
Session: CR25, M 2 5.29 [5.06, 5.54] 100.00 0.00
Session: CR25, M 1 - 2 -0.45 [-0.66, -0.22] 99.95 0.15
Session: CRA, M
Session: CRA, M 1 5.57 [5.33, 5.78] 100.00 0.00
Session: CRA, M 2 5.16 [4.85, 5.50] 100.00 0.00
Session: CRA, M 1 - 2 -0.41 [-0.70, -0.11] 99.20 1.05
Session: CRV, M
Session: CRV, M 1 5.49 [5.30, 5.68] 100.00 0.00
Session: CRV, M 2 5.29 [5.08, 5.50] 100.00 0.00
Session: CRV, M 1 - 2 -0.20 [-0.39, -0.03] 98.20 4.05
Session: Control, F
Session: Control, F 1 5.75 [5.55, 5.93] 100.00 0.00
Session: Control, F 2 5.35 [5.14, 5.58] 100.00 0.00
Session: Control, F 1 - 2 -0.40 [-0.59, -0.22] 99.95 0.05
Session: CR25, F
Session: CR25, F 1 5.49 [5.29, 5.70] 100.00 0.00
Session: CR25, F 2 5.19 [4.97, 5.41] 100.00 0.00
Session: CR25, F 1 - 2 -0.30 [-0.51, -0.09] 99.50 0.85
Session: CRA, F
Session: CRA, F 1 5.47 [5.28, 5.70] 100.00 0.00
Session: CRA, F 2 5.11 [4.87, 5.37] 100.00 0.00
Session: CRA, F 1 - 2 -0.37 [-0.57, -0.15] 99.85 0.25
Session: CRV, F
Session: CRV, F 1 5.45 [5.27, 5.63] 100.00 0.00
Session: CRV, F 2 5.27 [5.06, 5.47] 100.00 0.00
Session: CRV, F 1 - 2 -0.18 [-0.34, -0.02] 98.25 3.85

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 -0.01 [-0.28, 0.29] 53.85 23.40
Session × Diet: Control, M - CR25, M 2 0.03 [-0.30, 0.36] 56.15 19.85
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 0.16 [-0.14, 0.45] 84.25 13.90
Session × Diet: Control, M - CRA, M 2 0.16 [-0.26, 0.52] 79.75 12.10
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 0.22 [-0.06, 0.49] 94.80 6.20
Session × Diet: Control, M - CRV, M 2 0.02 [-0.30, 0.33] 56.75 21.50
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 -0.02 [-0.29, 0.23] 57.30 24.50
Session × Sex: Control, M - Control, F 2 -0.03 [-0.33, 0.30] 57.65 19.65
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 0.23 [-0.03, 0.53] 94.80 5.55
Session × Diet × Sex: Control, M - CR25, F 2 0.13 [-0.19, 0.48] 79.10 14.90
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 0.25 [-0.05, 0.53] 95.65 5.40
Session × Diet × Sex: Control, M - CRA, F 2 0.21 [-0.13, 0.55] 89.05 8.95
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 0.27 [0.00, 0.54] 97.85 3.00
Session × Diet × Sex: Control, M - CRV, F 2 0.05 [-0.23, 0.37] 63.30 19.50
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 0.16 [-0.12, 0.49] 86.35 13.05
Session × Diet: CR25, M - CRA, M 2 0.13 [-0.27, 0.52] 74.25 13.85
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 0.24 [-0.03, 0.53] 95.00 5.85
Session × Diet: CR25, M - CRV, M 2 -0.01 [-0.33, 0.32] 51.85 20.85
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 -0.01 [-0.29, 0.27] 53.75 23.25
Session × Diet × Sex: CR25, M - Control, F 2 -0.07 [-0.37, 0.25] 66.20 18.10
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 0.24 [-0.05, 0.52] 94.50 5.95
Session × Sex: CR25, M - CR25, F 2 0.10 [-0.22, 0.44] 72.85 16.95
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 0.26 [-0.04, 0.57] 95.80 4.45
Session × Diet × Sex: CR25, M - CRA, F 2 0.18 [-0.17, 0.52] 85.30 11.05
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 0.28 [0.01, 0.55] 97.90 2.85
Session × Diet × Sex: CR25, M - CRV, F 2 0.02 [-0.28, 0.35] 55.15 20.05
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 0.07 [-0.23, 0.35] 69.55 19.85
Session × Diet: CRA, M - CRV, M 2 -0.14 [-0.50, 0.26] 76.55 13.45
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 -0.18 [-0.50, 0.09] 89.30 9.75
Session × Diet × Sex: CRA, M - Control, F 2 -0.19 [-0.59, 0.18] 84.15 11.00
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 0.08 [-0.21, 0.40] 68.25 17.50
Session × Diet × Sex: CRA, M - CR25, F 2 -0.04 [-0.45, 0.33] 56.60 15.05
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 0.09 [-0.20, 0.40] 72.25 17.60
Session × Sex: CRA, M - CRA, F 2 0.05 [-0.35, 0.44] 59.95 16.30
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 0.12 [-0.16, 0.42] 78.20 16.70
Session × Diet × Sex: CRA, M - CRV, F 2 -0.11 [-0.51, 0.24] 71.15 14.85
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 -0.25 [-0.53, 0.02] 96.35 5.30
Session × Diet × Sex: CRV, M - Control, F 2 -0.06 [-0.36, 0.25] 64.50 20.00
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 0.00 [-0.28, 0.27] 51.25 24.60
Session × Diet × Sex: CRV, M - CR25, F 2 0.10 [-0.21, 0.42] 74.65 17.75
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 0.02 [-0.25, 0.31] 56.20 22.85
Session × Diet × Sex: CRV, M - CRA, F 2 0.18 [-0.13, 0.53] 86.85 11.35
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 0.04 [-0.23, 0.29] 62.05 23.45
Session × Sex: CRV, M - CRV, F 2 0.03 [-0.26, 0.32] 56.95 20.95
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 0.26 [-0.03, 0.53] 96.40 4.70
Session × Diet: Control, F - CR25, F 2 0.16 [-0.17, 0.45] 84.80 11.90
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 0.27 [-0.01, 0.55] 97.10 3.40
Session × Diet: Control, F - CRA, F 2 0.25 [-0.08, 0.57] 92.65 6.35
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 0.30 [0.02, 0.55] 98.85 2.40
Session × Diet: Control, F - CRV, F 2 0.08 [-0.20, 0.38] 69.90 18.90
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 0.02 [-0.28, 0.31] 55.20 21.35
Session × Diet: CR25, F - CRA, F 2 0.08 [-0.21, 0.43] 69.70 18.20
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 0.04 [-0.25, 0.30] 60.60 22.10
Session × Diet: CR25, F - CRV, F 2 -0.08 [-0.37, 0.23] 69.85 19.50
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 0.02 [-0.25, 0.31] 56.25 23.40
Session × Diet: CRA, F - CRV, F 2 -0.16 [-0.50, 0.13] 84.60 11.25

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 0.13 [-0.08, 0.32] 88.10 15.65
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 0.21 [0.00, 0.42] 97.60 4.45
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 0.26 [0.06, 0.46] 99.65 1.25
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 0.09 [-0.11, 0.32] 81.15 21.40
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 0.14 [-0.07, 0.33] 91.35 12.55
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 0.05 [-0.14, 0.26] 68.55 28.40
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 0.10 [-0.13, 0.33] 79.60 18.70
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 0.20 [-0.06, 0.45] 93.25 8.20
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 0.05 [-0.15, 0.29] 68.40 26.65
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 0.11 [-0.17, 0.35] 79.35 18.65
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 -0.04 [-0.27, 0.18] 65.55 27.30
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 -0.15 [-0.37, 0.12] 87.15 13.15
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 0.09 [-0.05, 0.24] 90.10 21.35
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 0.04 [-0.13, 0.21] 66.15 32.15

Bar Plot

Density Plot

Jump Time by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 23.1 15.5 5.0 61.0 0.0
Control F 24.0 73.9 27.2 19.0 122.0 0.0
CR25 M 24.0 21.3 11.7 3.0 41.0 0.0
CR25 F 24.0 78.3 38.6 17.0 164.0 0.0
CRA M 20.0 26.2 22.9 3.0 87.0 0.0
CRA F 20.0 83.2 50.9 28.0 222.0 0.0
CRV M 24.0 21.0 13.3 6.0 49.0 0.0
CRV F 23.0 89.1 42.9 27.0 181.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: negbinomial
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 3.453 0.282 2.906 4.015 Fixed Effects
shape_Intercept 2.728 1.061 0.783 4.949 Fixed Effects
DietCR25 −0.070 0.397 −0.850 0.709 Fixed Effects
DietCRA 0.255 0.445 −0.612 1.129 Fixed Effects
DietCRV −0.155 0.378 −0.890 0.597 Fixed Effects
SexF 1.180 0.339 0.509 1.841 Fixed Effects
Session −0.285 0.169 −0.613 0.051 Fixed Effects
DietCR25:SexF 0.224 0.498 −0.755 1.201 Fixed Effects
DietCRA:SexF −0.355 0.522 −1.380 0.670 Fixed Effects
DietCRV:SexF 0.143 0.471 −0.777 1.075 Fixed Effects
DietCR25:Session 0.013 0.235 −0.453 0.470 Fixed Effects
DietCRA:Session −0.145 0.280 −0.699 0.421 Fixed Effects
DietCRV:Session 0.019 0.221 −0.421 0.450 Fixed Effects
SexF:Session 0.024 0.192 −0.353 0.404 Fixed Effects
DietCR25:SexF:Session −0.103 0.280 −0.649 0.456 Fixed Effects
DietCRA:SexF:Session 0.252 0.308 −0.374 0.852 Fixed Effects
DietCRV:SexF:Session 0.111 0.260 −0.396 0.629 Fixed Effects
shape_DietCR25 −0.172 0.830 −1.771 1.471 Fixed Effects
shape_DietCRA 0.151 0.834 −1.453 1.789 Fixed Effects
shape_DietCRV 0.307 0.840 −1.352 1.957 Fixed Effects
shape_SexF 0.181 0.805 −1.392 1.762 Fixed Effects
shape_Session −0.376 0.651 −1.642 0.930 Fixed Effects
shape_DietCR25:SexF −0.407 0.853 −2.054 1.295 Fixed Effects
shape_DietCRA:SexF 0.330 0.860 −1.349 1.993 Fixed Effects
shape_DietCRV:SexF −0.205 0.886 −1.911 1.561 Fixed Effects
shape_DietCR25:Session 0.232 0.623 −0.939 1.496 Fixed Effects
shape_DietCRA:Session −0.352 0.585 −1.476 0.837 Fixed Effects
shape_DietCRV:Session 0.287 0.653 −0.940 1.654 Fixed Effects
shape_SexF:Session 0.580 0.608 −0.577 1.805 Fixed Effects
shape_DietCR25:SexF:Session −0.108 0.704 −1.505 1.287 Fixed Effects
shape_DietCRA:SexF:Session 0.431 0.736 −0.978 1.923 Fixed Effects
shape_DietCRV:SexF:Session −0.199 0.741 −1.627 1.294 Fixed Effects

Posterior Check

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Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.01 [-0.32, 0.31] 52.00 42.80
Diet: Control vs CRA
Diet: Control vs CRA -0.05 [-0.37, 0.31] 61.00 40.15
Diet: Control vs CRV
Diet: Control vs CRV -0.03 [-0.36, 0.29] 57.05 44.10
Diet: CR25 vs CRA
Diet: CR25 vs CRA -0.06 [-0.39, 0.28] 65.05 39.35
Diet: CR25 vs CRV
Diet: CR25 vs CRV -0.05 [-0.37, 0.26] 61.30 42.75
Diet: CRA vs CRV
Diet: CRA vs CRV 0.01 [-0.31, 0.35] 52.10 44.05
Sex: M vs F
Sex: M vs F -1.31 [-1.54, -1.08] 100.00 0.00

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F 0.06 [-0.56, 0.70] 58.10 23.15
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F 0.02 [-0.69, 0.65] 53.20 23.90
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F 0.29 [-0.30, 0.93] 82.90 15.10
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F -0.03 [-0.77, 0.57] 53.90 22.85
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F 0.23 [-0.39, 0.92] 75.35 17.35
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F 0.26 [-0.35, 1.00] 78.45 16.85

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F -1.23 [-1.70, -0.77] 100 0
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M 1.27 [0.80, 1.68] 100 0
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F -1.28 [-1.75, -0.84] 100 0
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M 1.18 [0.71, 1.72] 100 0
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F -1.39 [-1.84, -0.95] 100 0
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M 1.35 [0.85, 1.76] 100 0
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F -1.33 [-1.76, -0.84] 100 0
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M 1.20 [0.68, 1.71] 100 0
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F -1.45 [-1.90, -1.01] 100 0
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M 1.35 [0.94, 1.82] 100 0
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F -1.36 [-1.86, -0.87] 100 0
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M 1.39 [0.97, 1.88] 100 0

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 -0.27 [-0.39, -0.16] 100 0.1

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 3.18 [2.86, 3.51] 100.00 0.00
Session: Control, M 2 2.88 [2.52, 3.30] 100.00 0.00
Session: Control, M 1 - 2 -0.28 [-0.60, 0.05] 95.75 11.55
Session: CR25, M
Session: CR25, M 1 3.10 [2.74, 3.47] 100.00 0.00
Session: CR25, M 2 2.83 [2.44, 3.22] 100.00 0.00
Session: CR25, M 1 - 2 -0.27 [-0.60, 0.10] 93.65 13.55
Session: CRA, M
Session: CRA, M 1 3.28 [2.86, 3.72] 100.00 0.00
Session: CRA, M 2 2.84 [2.32, 3.33] 100.00 0.00
Session: CRA, M 1 - 2 -0.44 [-0.92, 0.01] 96.30 5.30
Session: CRV, M
Session: CRV, M 1 3.03 [2.69, 3.38] 100.00 0.00
Session: CRV, M 2 2.77 [2.40, 3.14] 100.00 0.00
Session: CRV, M 1 - 2 -0.26 [-0.57, 0.02] 96.30 11.60
Session: Control, F
Session: Control, F 1 4.37 [4.07, 4.68] 100.00 0.00
Session: Control, F 2 4.11 [3.82, 4.45] 100.00 0.00
Session: Control, F 1 - 2 -0.26 [-0.48, -0.06] 98.90 5.60
Session: CR25, F
Session: CR25, F 1 4.44 [4.09, 4.79] 100.00 0.00
Session: CR25, F 2 4.08 [3.72, 4.41] 100.00 0.00
Session: CR25, F 1 - 2 -0.36 [-0.60, -0.05] 98.95 3.65
Session: CRA, F
Session: CRA, F 1 4.37 [4.05, 4.72] 100.00 0.00
Session: CRA, F 2 4.22 [3.89, 4.58] 100.00 0.00
Session: CRA, F 1 - 2 -0.15 [-0.35, 0.04] 94.95 24.40
Session: CRV, F
Session: CRV, F 1 4.49 [4.19, 4.81] 100.00 0.00
Session: CRV, F 2 4.37 [4.08, 4.69] 100.00 0.00
Session: CRV, F 1 - 2 -0.13 [-0.35, 0.08] 90.15 33.80

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 0.08 [-0.44, 0.55] 60.10 26.20
Session × Diet: Control, M - CR25, M 2 0.06 [-0.49, 0.63] 59.50 26.10
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 -0.10 [-0.61, 0.42] 65.40 26.15
Session × Diet: Control, M - CRA, M 2 0.04 [-0.59, 0.66] 56.20 23.75
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 0.15 [-0.36, 0.59] 72.40 25.25
Session × Diet: Control, M - CRV, M 2 0.12 [-0.38, 0.67] 66.70 24.35
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 -1.20 [-1.66, -0.77] 100.00 0.00
Session × Sex: Control, M - Control, F 2 -1.23 [-1.68, -0.72] 100.00 0.00
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 -1.26 [-1.75, -0.79] 100.00 0.00
Session × Diet × Sex: Control, M - CR25, F 2 -1.19 [-1.71, -0.70] 100.00 0.00
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 -1.20 [-1.64, -0.68] 100.00 0.00
Session × Diet × Sex: Control, M - CRA, F 2 -1.33 [-1.81, -0.81] 100.00 0.00
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 -1.33 [-1.76, -0.84] 100.00 0.00
Session × Diet × Sex: Control, M - CRV, F 2 -1.47 [-1.94, -0.95] 100.00 0.00
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 -0.18 [-0.79, 0.33] 73.75 22.10
Session × Diet: CR25, M - CRA, M 2 -0.01 [-0.66, 0.67] 51.10 24.60
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 0.07 [-0.42, 0.58] 61.05 28.10
Session × Diet: CR25, M - CRV, M 2 0.06 [-0.45, 0.59] 58.85 28.00
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 -1.26 [-1.76, -0.79] 100.00 0.00
Session × Diet × Sex: CR25, M - Control, F 2 -1.28 [-1.74, -0.74] 100.00 0.00
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 -1.34 [-1.84, -0.83] 100.00 0.00
Session × Sex: CR25, M - CR25, F 2 -1.25 [-1.79, -0.73] 100.00 0.00
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 -1.27 [-1.73, -0.73] 100.00 0.00
Session × Diet × Sex: CR25, M - CRA, F 2 -1.39 [-1.90, -0.85] 100.00 0.00
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 -1.39 [-1.86, -0.90] 100.00 0.00
Session × Diet × Sex: CR25, M - CRV, F 2 -1.54 [-2.02, -1.00] 100.00 0.00
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 0.24 [-0.27, 0.81] 82.20 18.30
Session × Diet: CRA, M - CRV, M 2 0.07 [-0.58, 0.66] 58.60 22.45
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 -1.10 [-1.61, -0.56] 100.00 0.00
Session × Diet × Sex: CRA, M - Control, F 2 -1.27 [-1.87, -0.70] 99.95 0.05
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 -1.16 [-1.68, -0.58] 100.00 0.00
Session × Diet × Sex: CRA, M - CR25, F 2 -1.24 [-1.86, -0.63] 99.90 0.00
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 -1.09 [-1.63, -0.57] 100.00 0.05
Session × Sex: CRA, M - CRA, F 2 -1.38 [-1.98, -0.73] 99.95 0.00
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 -1.21 [-1.72, -0.69] 100.00 0.00
Session × Diet × Sex: CRA, M - CRV, F 2 -1.52 [-2.13, -0.93] 100.00 0.00
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 -1.35 [-1.82, -0.85] 100.00 0.00
Session × Diet × Sex: CRV, M - Control, F 2 -1.35 [-1.82, -0.86] 100.00 0.00
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 -1.40 [-1.90, -0.91] 100.00 0.00
Session × Diet × Sex: CRV, M - CR25, F 2 -1.31 [-1.82, -0.84] 100.00 0.00
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 -1.34 [-1.83, -0.86] 100.00 0.00
Session × Diet × Sex: CRV, M - CRA, F 2 -1.45 [-1.97, -0.94] 100.00 0.00
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 -1.47 [-1.90, -1.01] 100.00 0.00
Session × Sex: CRV, M - CRV, F 2 -1.60 [-2.08, -1.11] 100.00 0.00
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 -0.06 [-0.52, 0.41] 61.20 29.30
Session × Diet: Control, F - CR25, F 2 0.03 [-0.45, 0.49] 54.45 31.25
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 0.00 [-0.42, 0.49] 50.65 30.90
Session × Diet: Control, F - CRA, F 2 -0.11 [-0.53, 0.37] 68.00 27.50
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 -0.13 [-0.55, 0.31] 71.65 27.80
Session × Diet: Control, F - CRV, F 2 -0.25 [-0.73, 0.17] 86.65 17.25
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 0.07 [-0.41, 0.56] 60.75 29.80
Session × Diet: CR25, F - CRA, F 2 -0.13 [-0.63, 0.33] 70.90 26.70
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 -0.06 [-0.52, 0.41] 60.00 30.20
Session × Diet: CR25, F - CRV, F 2 -0.28 [-0.79, 0.16] 88.05 14.80
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 -0.13 [-0.60, 0.29] 69.85 25.80
Session × Diet: CRA, F - CRV, F 2 -0.14 [-0.61, 0.32] 72.75 27.05

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 0.00 [-0.35, 0.35] 51.20 39.40
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 -0.05 [-0.42, 0.29] 61.55 38.60
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 0.01 [-0.35, 0.32] 52.95 43.90
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 -0.06 [-0.46, 0.28] 62.65 37.10
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 0.01 [-0.33, 0.33] 52.25 40.75
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 0.06 [-0.30, 0.40] 63.65 38.25
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 0.04 [-0.32, 0.39] 58.95 37.55
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 -0.03 [-0.43, 0.35] 57.70 36.85
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 -0.07 [-0.42, 0.26] 65.70 38.25
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 -0.07 [-0.47, 0.34] 62.70 35.05
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 -0.12 [-0.44, 0.26] 74.30 32.50
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 -0.04 [-0.40, 0.37] 58.10 35.00
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 -1.27 [-1.54, -1.04] 100.00 0.00
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 -1.36 [-1.62, -1.09] 100.00 0.00

Bar Plot

Density Plot

Jump Count by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 89.0 48.2 26.0 197.0 0.0
Control F 24.0 244.5 75.4 83.0 369.0 0.0
CR25 M 24.0 84.7 36.5 30.0 167.0 0.0
CR25 F 24.0 259.6 132.6 62.0 643.0 0.0
CRA M 20.0 100.5 66.8 27.0 285.0 0.0
CRA F 20.0 267.2 141.8 104.0 685.0 0.0
CRV M 24.0 86.0 41.3 29.0 162.0 0.0
CRV F 23.0 272.7 108.3 89.0 440.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: negbinomial
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 4.931 0.228 4.484 5.381 Fixed Effects
shape_Intercept 3.178 0.976 1.400 5.254 Fixed Effects
DietCR25 −0.173 0.330 −0.832 0.469 Fixed Effects
DietCRA 0.220 0.350 −0.465 0.910 Fixed Effects
DietCRV −0.276 0.295 −0.859 0.303 Fixed Effects
SexF 0.824 0.288 0.250 1.389 Fixed Effects
Session −0.351 0.138 −0.615 −0.072 Fixed Effects
DietCR25:SexF 0.375 0.425 −0.459 1.207 Fixed Effects
DietCRA:SexF −0.052 0.431 −0.907 0.796 Fixed Effects
DietCRV:SexF 0.197 0.399 −0.588 0.964 Fixed Effects
DietCR25:Session 0.115 0.199 −0.277 0.509 Fixed Effects
DietCRA:Session −0.099 0.214 −0.524 0.320 Fixed Effects
DietCRV:Session 0.164 0.173 −0.183 0.496 Fixed Effects
SexF:Session 0.156 0.166 −0.175 0.480 Fixed Effects
DietCR25:SexF:Session −0.254 0.246 −0.736 0.235 Fixed Effects
DietCRA:SexF:Session 0.009 0.249 −0.475 0.500 Fixed Effects
DietCRV:SexF:Session −0.039 0.229 −0.490 0.414 Fixed Effects
shape_DietCR25 −0.061 0.796 −1.605 1.510 Fixed Effects
shape_DietCRA −0.016 0.812 −1.602 1.573 Fixed Effects
shape_DietCRV 0.467 0.822 −1.116 2.100 Fixed Effects
shape_SexF 0.180 0.786 −1.348 1.729 Fixed Effects
shape_Session −0.466 0.590 −1.645 0.689 Fixed Effects
shape_DietCR25:SexF −0.357 0.822 −1.954 1.275 Fixed Effects
shape_DietCRA:SexF 0.188 0.861 −1.485 1.899 Fixed Effects
shape_DietCRV:SexF −0.001 0.871 −1.694 1.721 Fixed Effects
shape_DietCR25:Session 0.000 0.551 −1.073 1.066 Fixed Effects
shape_DietCRA:Session −0.123 0.557 −1.204 0.980 Fixed Effects
shape_DietCRV:Session 0.113 0.564 −0.983 1.241 Fixed Effects
shape_SexF:Session 0.344 0.548 −0.731 1.426 Fixed Effects
shape_DietCR25:SexF:Session 0.094 0.649 −1.188 1.395 Fixed Effects
shape_DietCRA:SexF:Session 0.375 0.684 −0.937 1.737 Fixed Effects
shape_DietCRV:SexF:Session −0.627 0.639 −1.868 0.653 Fixed Effects

Posterior Check

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Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 -0.01 [-0.26, 0.26] 51.70 43.85
Diet: Control vs CRA
Diet: Control vs CRA -0.05 [-0.34, 0.22] 63.75 37.95
Diet: Control vs CRV
Diet: Control vs CRV -0.04 [-0.28, 0.22] 62.15 41.60
Diet: CR25 vs CRA
Diet: CR25 vs CRA -0.05 [-0.35, 0.22] 64.80 36.95
Diet: CR25 vs CRV
Diet: CR25 vs CRV -0.04 [-0.29, 0.23] 61.35 41.50
Diet: CRA vs CRV
Diet: CRA vs CRV 0.01 [-0.26, 0.26] 54.95 41.85
Sex: M vs F
Sex: M vs F -1.08 [-1.26, -0.88] 100.00 0.00

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F 0.01 [-0.52, 0.52] 51.10 21.10
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F -0.04 [-0.57, 0.48] 55.90 22.90
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F 0.14 [-0.41, 0.63] 70.15 20.45
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F -0.04 [-0.60, 0.52] 55.65 22.00
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F 0.14 [-0.41, 0.64] 69.70 18.65
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F 0.19 [-0.38, 0.71] 74.45 16.80

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F -1.05 [-1.46, -0.72] 100 0
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M 1.06 [0.69, 1.42] 100 0
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F -1.09 [-1.47, -0.69] 100 0
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M 0.98 [0.59, 1.36] 100 0
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F -1.16 [-1.53, -0.79] 100 0
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M 1.09 [0.75, 1.44] 100 0
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F -1.09 [-1.45, -0.68] 100 0
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M 0.98 [0.55, 1.36] 100 0
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F -1.16 [-1.53, -0.78] 100 0
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M 1.09 [0.76, 1.49] 100 0
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F -1.09 [-1.48, -0.69] 100 0
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M 1.13 [0.74, 1.47] 100 0

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 -0.26 [-0.35, -0.18] 100 0

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 4.58 [4.31, 4.85] 100.00 0.00
Session: Control, M 2 4.23 [3.93, 4.58] 100.00 0.00
Session: Control, M 1 - 2 -0.35 [-0.60, -0.07] 99.15 2.70
Session: CR25, M
Session: CR25, M 1 4.52 [4.25, 4.83] 100.00 0.00
Session: CR25, M 2 4.29 [3.97, 4.61] 100.00 0.00
Session: CR25, M 1 - 2 -0.24 [-0.52, 0.07] 93.45 12.60
Session: CRA, M
Session: CRA, M 1 4.70 [4.40, 5.03] 100.00 0.00
Session: CRA, M 2 4.25 [3.87, 4.63] 100.00 0.00
Session: CRA, M 1 - 2 -0.45 [-0.80, -0.12] 99.10 1.85
Session: CRV, M
Session: CRV, M 1 4.46 [4.20, 4.71] 100.00 0.00
Session: CRV, M 2 4.28 [4.01, 4.57] 100.00 0.00
Session: CRV, M 1 - 2 -0.19 [-0.40, 0.01] 96.65 11.85
Session: Control, F
Session: Control, F 1 5.55 [5.30, 5.81] 100.00 0.00
Session: Control, F 2 5.36 [5.09, 5.63] 100.00 0.00
Session: Control, F 1 - 2 -0.19 [-0.39, -0.01] 97.65 9.50
Session: CR25, F
Session: CR25, F 1 5.62 [5.37, 5.91] 100.00 0.00
Session: CR25, F 2 5.29 [5.00, 5.57] 100.00 0.00
Session: CR25, F 1 - 2 -0.33 [-0.56, -0.09] 99.35 2.10
Session: CRA, F
Session: CRA, F 1 5.64 [5.36, 5.89] 100.00 0.00
Session: CRA, F 2 5.35 [5.07, 5.62] 100.00 0.00
Session: CRA, F 1 - 2 -0.29 [-0.46, -0.12] 99.80 1.05
Session: CRV, F
Session: CRV, F 1 5.61 [5.32, 5.86] 100.00 0.00
Session: CRV, F 2 5.54 [5.24, 5.84] 100.00 0.00
Session: CRV, F 1 - 2 -0.07 [-0.32, 0.17] 72.25 39.30

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 0.05 [-0.33, 0.49] 61.10 28.80
Session × Diet: Control, M - CR25, M 2 -0.06 [-0.56, 0.39] 60.10 23.80
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 -0.12 [-0.55, 0.29] 71.40 23.30
Session × Diet: Control, M - CRA, M 2 -0.03 [-0.50, 0.51] 54.65 23.10
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 0.11 [-0.28, 0.49] 72.45 26.15
Session × Diet: Control, M - CRV, M 2 -0.05 [-0.45, 0.39] 59.05 26.35
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 -0.98 [-1.34, -0.61] 100.00 0.00
Session × Sex: Control, M - Control, F 2 -1.14 [-1.58, -0.74] 100.00 0.00
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 -1.03 [-1.44, -0.68] 100.00 0.00
Session × Diet × Sex: Control, M - CR25, F 2 -1.07 [-1.49, -0.61] 100.00 0.00
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 -1.06 [-1.43, -0.65] 100.00 0.00
Session × Diet × Sex: Control, M - CRA, F 2 -1.13 [-1.54, -0.69] 100.00 0.00
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 -1.03 [-1.41, -0.65] 100.00 0.00
Session × Diet × Sex: Control, M - CRV, F 2 -1.31 [-1.75, -0.89] 100.00 0.00
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 -0.18 [-0.56, 0.32] 79.90 18.45
Session × Diet: CR25, M - CRA, M 2 0.04 [-0.49, 0.53] 55.95 21.55
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 0.06 [-0.35, 0.45] 62.55 28.50
Session × Diet: CR25, M - CRV, M 2 0.01 [-0.41, 0.43] 52.55 26.85
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 -1.03 [-1.44, -0.64] 100.00 0.00
Session × Diet × Sex: CR25, M - Control, F 2 -1.07 [-1.48, -0.63] 100.00 0.00
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 -1.10 [-1.52, -0.72] 100.00 0.00
Session × Sex: CR25, M - CR25, F 2 -1.00 [-1.41, -0.53] 100.00 0.00
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 -1.12 [-1.49, -0.70] 100.00 0.00
Session × Diet × Sex: CR25, M - CRA, F 2 -1.07 [-1.49, -0.63] 100.00 0.00
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 -1.08 [-1.48, -0.70] 100.00 0.00
Session × Diet × Sex: CR25, M - CRV, F 2 -1.24 [-1.69, -0.78] 100.00 0.00
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 0.24 [-0.19, 0.64] 87.25 14.40
Session × Diet: CRA, M - CRV, M 2 -0.01 [-0.56, 0.42] 51.95 26.00
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 -0.85 [-1.25, -0.45] 100.00 0.05
Session × Diet × Sex: CRA, M - Control, F 2 -1.11 [-1.54, -0.61] 100.00 0.00
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 -0.91 [-1.34, -0.51] 100.00 0.00
Session × Diet × Sex: CRA, M - CR25, F 2 -1.03 [-1.53, -0.56] 100.00 0.00
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 -0.94 [-1.31, -0.50] 100.00 0.00
Session × Sex: CRA, M - CRA, F 2 -1.09 [-1.64, -0.68] 100.00 0.00
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 -0.90 [-1.32, -0.50] 100.00 0.00
Session × Diet × Sex: CRA, M - CRV, F 2 -1.27 [-1.78, -0.80] 100.00 0.00
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 -1.09 [-1.45, -0.73] 100.00 0.00
Session × Diet × Sex: CRV, M - Control, F 2 -1.09 [-1.47, -0.69] 100.00 0.00
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 -1.15 [-1.56, -0.78] 100.00 0.00
Session × Diet × Sex: CRV, M - CR25, F 2 -1.01 [-1.42, -0.61] 100.00 0.00
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 -1.18 [-1.56, -0.80] 100.00 0.00
Session × Diet × Sex: CRV, M - CRA, F 2 -1.08 [-1.45, -0.68] 100.00 0.00
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 -1.14 [-1.51, -0.75] 100.00 0.00
Session × Sex: CRV, M - CRV, F 2 -1.26 [-1.68, -0.87] 100.00 0.00
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 -0.07 [-0.44, 0.29] 63.65 29.35
Session × Diet: Control, F - CR25, F 2 0.08 [-0.36, 0.47] 65.90 27.35
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 -0.08 [-0.43, 0.31] 67.15 27.70
Session × Diet: Control, F - CRA, F 2 0.01 [-0.37, 0.40] 51.40 28.90
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 -0.05 [-0.42, 0.31] 60.55 30.45
Session × Diet: Control, F - CRV, F 2 -0.17 [-0.57, 0.23] 79.60 19.95
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 -0.02 [-0.41, 0.35] 54.05 27.35
Session × Diet: CR25, F - CRA, F 2 -0.07 [-0.48, 0.32] 62.55 25.90
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 0.01 [-0.37, 0.39] 52.65 28.95
Session × Diet: CR25, F - CRV, F 2 -0.23 [-0.67, 0.18] 86.20 14.75
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 0.04 [-0.35, 0.42] 57.30 30.60
Session × Diet: CRA, F - CRV, F 2 -0.17 [-0.56, 0.27] 80.70 19.80

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 0.00 [-0.29, 0.27] 51.55 41.50
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 -0.10 [-0.40, 0.18] 75.70 32.45
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 0.03 [-0.23, 0.31] 59.95 40.90
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 -0.10 [-0.37, 0.22] 74.35 30.70
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 0.04 [-0.24, 0.32] 60.75 38.05
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 0.14 [-0.15, 0.42] 83.10 25.80
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 0.01 [-0.30, 0.31] 52.55 35.80
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 -0.01 [-0.34, 0.29] 52.30 35.70
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 -0.11 [-0.38, 0.20] 75.60 29.60
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 -0.02 [-0.36, 0.29] 54.10 35.10
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 -0.12 [-0.43, 0.20] 77.15 28.30
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 -0.10 [-0.41, 0.22] 72.50 30.00
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 -1.04 [-1.24, -0.85] 100.00 0.00
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 -1.13 [-1.33, -0.91] 100.00 0.00

Bar Plot

Density Plot

Distance Travelled by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 5,114.3 1,823.0 2,272.7 10,050.5 0.0
Control F 24.0 5,712.3 1,632.1 2,449.3 8,571.9 0.0
CR25 M 24.0 5,310.7 1,766.3 1,846.4 9,011.1 0.0
CR25 F 24.0 5,167.6 1,722.6 2,578.3 8,235.0 0.0
CRA M 20.0 4,747.1 1,924.0 1,480.2 8,168.2 0.0
CRA F 20.0 5,090.4 1,759.9 3,343.3 9,749.1 0.0
CRV M 24.0 5,255.5 1,793.5 3,386.8 10,899.8 0.0
CRV F 23.0 5,100.5 1,280.4 2,524.8 8,084.6 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: gamma
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 9.087 0.131 8.829 9.343 Fixed Effects
DietCR25 −0.036 0.184 −0.395 0.325 Fixed Effects
DietCRA 0.004 0.195 −0.378 0.384 Fixed Effects
DietCRV −0.276 0.186 −0.636 0.097 Fixed Effects
SexF 0.121 0.181 −0.237 0.476 Fixed Effects
Session −0.391 0.072 −0.534 −0.251 Fixed Effects
DietCR25:SexF −0.273 0.259 −0.781 0.223 Fixed Effects
DietCRA:SexF −0.134 0.270 −0.660 0.392 Fixed Effects
DietCRV:SexF −0.241 0.258 −0.749 0.260 Fixed Effects
DietCR25:Session 0.045 0.102 −0.153 0.246 Fixed Effects
DietCRA:Session −0.075 0.107 −0.287 0.140 Fixed Effects
DietCRV:Session 0.206 0.103 0.002 0.409 Fixed Effects
SexF:Session −0.001 0.101 −0.201 0.197 Fixed Effects
DietCR25:SexF:Session 0.086 0.144 −0.190 0.367 Fixed Effects
DietCRA:SexF:Session 0.082 0.149 −0.211 0.373 Fixed Effects
DietCRV:SexF:Session 0.064 0.144 −0.219 0.345 Fixed Effects

Posterior Check

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$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x0000019d20117738>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.04 [-0.12, 0.19] 69.55 29.75
Diet: Control vs CRA
Diet: Control vs CRA 0.11 [-0.04, 0.29] 91.35 13.65
Diet: Control vs CRV
Diet: Control vs CRV 0.04 [-0.13, 0.19] 69.75 29.40
Diet: CR25 vs CRA
Diet: CR25 vs CRA 0.07 [-0.09, 0.25] 80.00 22.65
Diet: CR25 vs CRV
Diet: CR25 vs CRV 0.00 [-0.15, 0.17] 50.05 31.90
Diet: CRA vs CRV
Diet: CRA vs CRV -0.07 [-0.23, 0.09] 80.35 23.90
Sex: M vs F
Sex: M vs F -0.05 [-0.15, 0.07] 79.30 33.15

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F -0.14 [-0.46, 0.17] 81.95 11.20
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F -0.01 [-0.33, 0.33] 52.60 15.65
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F -0.14 [-0.43, 0.19] 80.85 11.60
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F 0.14 [-0.20, 0.46] 78.50 12.25
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F 0.00 [-0.33, 0.31] 51.20 16.95
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F -0.13 [-0.46, 0.21] 77.90 11.50

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F -0.01 [-0.22, 0.22] 52.25 24.55
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M 0.09 [-0.15, 0.29] 78.00 17.60
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F 0.00 [-0.22, 0.23] 50.95 24.80
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M 0.23 [-0.00, 0.48] 96.85 3.70
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F -0.01 [-0.23, 0.21] 52.95 22.55
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M 0.09 [-0.13, 0.31] 79.05 16.75
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F 0.03 [-0.20, 0.26] 59.75 21.90
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M 0.11 [-0.12, 0.34] 83.80 13.60
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F 0.02 [-0.20, 0.26] 59.35 23.90
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M -0.02 [-0.25, 0.19] 57.35 24.40
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F -0.11 [-0.36, 0.11] 83.45 13.90
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M -0.03 [-0.24, 0.21] 57.95 22.70

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 -0.32 [-0.37, -0.26] 100 0

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 8.69 [8.53, 8.85] 100.00 0.0
Session: Control, M 2 8.30 [8.13, 8.50] 100.00 0.0
Session: Control, M 1 - 2 -0.39 [-0.54, -0.26] 100.00 0.0
Session: CR25, M
Session: CR25, M 1 8.71 [8.54, 8.89] 100.00 0.0
Session: CR25, M 2 8.36 [8.18, 8.53] 100.00 0.0
Session: CR25, M 1 - 2 -0.35 [-0.49, -0.18] 100.00 0.0
Session: CRA, M
Session: CRA, M 1 8.63 [8.44, 8.82] 100.00 0.0
Session: CRA, M 2 8.16 [7.97, 8.36] 100.00 0.0
Session: CRA, M 1 - 2 -0.47 [-0.63, -0.31] 100.00 0.0
Session: CRV, M
Session: CRV, M 1 8.62 [8.47, 8.81] 100.00 0.0
Session: CRV, M 2 8.44 [8.28, 8.63] 100.00 0.0
Session: CRV, M 1 - 2 -0.19 [-0.33, -0.03] 99.50 2.4
Session: Control, F
Session: Control, F 1 8.82 [8.65, 8.99] 100.00 0.0
Session: Control, F 2 8.43 [8.25, 8.61] 100.00 0.0
Session: Control, F 1 - 2 -0.39 [-0.54, -0.25] 100.00 0.0
Session: CR25, F
Session: CR25, F 1 8.63 [8.47, 8.80] 100.00 0.0
Session: CR25, F 2 8.37 [8.21, 8.55] 100.00 0.0
Session: CR25, F 1 - 2 -0.26 [-0.42, -0.11] 99.90 0.4
Session: CRA, F
Session: CRA, F 1 8.70 [8.51, 8.89] 100.00 0.0
Session: CRA, F 2 8.31 [8.12, 8.51] 100.00 0.0
Session: CRA, F 1 - 2 -0.39 [-0.53, -0.21] 100.00 0.0
Session: CRV, F
Session: CRV, F 1 8.57 [8.40, 8.75] 100.00 0.0
Session: CRV, F 2 8.45 [8.28, 8.64] 100.00 0.0
Session: CRV, F 1 - 2 -0.12 [-0.26, 0.04] 94.25 10.9

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 -0.01 [-0.25, 0.22] 53.00 21.40
Session × Diet: Control, M - CR25, M 2 -0.05 [-0.30, 0.21] 65.35 18.85
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 0.07 [-0.19, 0.32] 70.90 18.25
Session × Diet: Control, M - CRA, M 2 0.15 [-0.12, 0.41] 86.60 12.35
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 0.07 [-0.17, 0.29] 71.25 18.25
Session × Diet: Control, M - CRV, M 2 -0.13 [-0.40, 0.11] 85.05 10.85
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 -0.12 [-0.34, 0.11] 85.35 11.90
Session × Sex: Control, M - Control, F 2 -0.12 [-0.37, 0.13] 82.15 13.20
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 0.06 [-0.18, 0.31] 68.70 19.70
Session × Diet × Sex: Control, M - CR25, F 2 -0.07 [-0.32, 0.17] 71.05 19.60
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 0.00 [-0.25, 0.26] 50.95 20.90
Session × Diet × Sex: Control, M - CRA, F 2 -0.01 [-0.27, 0.24] 52.20 20.10
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 0.13 [-0.12, 0.36] 83.95 14.00
Session × Diet × Sex: Control, M - CRV, F 2 -0.14 [-0.40, 0.10] 87.20 11.15
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 0.08 [-0.17, 0.34] 72.05 17.70
Session × Diet: CR25, M - CRA, M 2 0.20 [-0.05, 0.45] 93.20 7.45
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 0.08 [-0.14, 0.33] 73.65 16.85
Session × Diet: CR25, M - CRV, M 2 -0.08 [-0.33, 0.17] 74.75 15.45
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 -0.12 [-0.37, 0.11] 83.05 13.90
Session × Diet × Sex: CR25, M - Control, F 2 -0.07 [-0.31, 0.18] 71.65 17.95
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 0.07 [-0.17, 0.31] 70.80 20.10
Session × Sex: CR25, M - CR25, F 2 -0.03 [-0.27, 0.22] 58.15 20.85
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 0.01 [-0.24, 0.28] 52.30 20.90
Session × Diet × Sex: CR25, M - CRA, F 2 0.05 [-0.22, 0.31] 64.35 18.00
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 0.14 [-0.11, 0.39] 86.30 11.65
Session × Diet × Sex: CR25, M - CRV, F 2 -0.09 [-0.35, 0.16] 75.55 17.70
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 0.00 [-0.28, 0.25] 50.80 20.85
Session × Diet: CRA, M - CRV, M 2 -0.28 [-0.56, -0.04] 98.55 2.00
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 -0.19 [-0.44, 0.07] 92.90 6.80
Session × Diet × Sex: CRA, M - Control, F 2 -0.27 [-0.54, -0.03] 98.05 2.25
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 -0.01 [-0.27, 0.23] 52.60 21.90
Session × Diet × Sex: CRA, M - CR25, F 2 -0.22 [-0.50, 0.01] 95.80 5.25
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 -0.07 [-0.33, 0.20] 70.15 16.25
Session × Sex: CRA, M - CRA, F 2 -0.15 [-0.42, 0.11] 86.85 10.10
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 0.06 [-0.19, 0.32] 68.10 18.50
Session × Diet × Sex: CRA, M - CRV, F 2 -0.29 [-0.56, -0.03] 98.45 2.00
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 -0.19 [-0.45, 0.04] 93.75 6.60
Session × Diet × Sex: CRV, M - Control, F 2 0.01 [-0.25, 0.26] 53.30 21.25
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 -0.01 [-0.24, 0.25] 53.55 23.05
Session × Diet × Sex: CRV, M - CR25, F 2 0.06 [-0.19, 0.30] 69.70 18.55
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 -0.07 [-0.30, 0.20] 71.05 17.90
Session × Diet × Sex: CRV, M - CRA, F 2 0.13 [-0.14, 0.37] 83.80 12.60
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 0.06 [-0.17, 0.32] 67.90 19.45
Session × Sex: CRV, M - CRV, F 2 -0.01 [-0.27, 0.25] 53.30 21.20
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 0.18 [-0.06, 0.41] 93.50 7.30
Session × Diet: Control, F - CR25, F 2 0.05 [-0.19, 0.32] 65.35 18.85
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 0.13 [-0.13, 0.37] 82.50 12.55
Session × Diet: Control, F - CRA, F 2 0.12 [-0.14, 0.38] 80.50 13.05
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 0.25 [0.01, 0.50] 97.90 3.60
Session × Diet: Control, F - CRV, F 2 -0.02 [-0.29, 0.22] 56.45 21.85
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 -0.06 [-0.31, 0.19] 69.40 21.50
Session × Diet: CR25, F - CRA, F 2 0.06 [-0.19, 0.33] 69.10 18.80
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 0.07 [-0.18, 0.30] 70.85 18.60
Session × Diet: CR25, F - CRV, F 2 -0.07 [-0.34, 0.16] 71.55 18.70
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 0.13 [-0.15, 0.37] 83.55 13.35
Session × Diet: CRA, F - CRV, F 2 -0.14 [-0.40, 0.13] 85.35 11.25

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 0.09 [-0.09, 0.25] 83.80 19.20
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 0.09 [-0.08, 0.29] 84.70 17.80
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 0.16 [-0.01, 0.34] 96.40 6.20
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 0.01 [-0.18, 0.18] 54.35 29.35
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 0.07 [-0.09, 0.24] 80.10 21.60
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 0.07 [-0.12, 0.24] 74.45 21.90
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 0.00 [-0.17, 0.19] 51.00 30.30
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 0.13 [-0.05, 0.32] 92.40 10.60
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 -0.08 [-0.26, 0.09] 80.20 21.55
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 0.13 [-0.06, 0.31] 91.55 10.65
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 -0.08 [-0.26, 0.10] 81.60 20.70
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 -0.21 [-0.39, -0.02] 98.60 2.85
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 -0.02 [-0.14, 0.11] 61.50 38.60
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 -0.08 [-0.21, 0.05] 87.25 21.35

Bar Plot

Density Plot

Velocity by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 573.1 215.0 137.2 1,101.8 0.0
Control F 24.0 533.1 186.8 208.0 915.8 0.0
CR25 M 24.0 566.0 178.2 247.1 840.8 0.0
CR25 F 24.0 492.1 169.7 213.5 911.6 0.0
CRA M 20.0 500.8 184.8 197.3 1,019.6 0.0
CRA F 20.0 453.9 159.5 152.6 723.6 0.0
CRV M 24.0 562.1 174.4 209.6 912.2 0.0
CRV F 23.0 518.1 144.6 300.1 847.1 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: gaussian
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 525.888 15.571 495.250 556.894 Fixed Effects
DietCR25 0.006 0.995 −1.943 1.925 Fixed Effects
DietCRA −0.047 0.995 −1.975 1.910 Fixed Effects
DietCRV 0.007 1.003 −1.966 1.959 Fixed Effects
SexF −0.054 1.000 −2.014 1.904 Fixed Effects
Session −0.231 1.018 −2.257 1.770 Fixed Effects
DietCR25:SexF −0.015 0.998 −1.971 1.931 Fixed Effects
DietCRA:SexF −0.026 1.007 −1.983 1.950 Fixed Effects
DietCRV:SexF 0.002 1.012 −2.010 1.980 Fixed Effects
DietCR25:Session −0.031 0.992 −2.012 1.935 Fixed Effects
DietCRA:Session −0.127 0.998 −2.077 1.851 Fixed Effects
DietCRV:Session −0.030 1.001 −1.960 1.938 Fixed Effects
SexF:Session −0.170 0.990 −2.138 1.775 Fixed Effects
DietCR25:SexF:Session −0.046 1.021 −2.053 1.927 Fixed Effects
DietCRA:SexF:Session −0.077 0.986 −2.006 1.823 Fixed Effects
DietCRV:SexF:Session −0.024 0.997 −1.978 1.932 Fixed Effects

Posterior Check

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$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

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Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.07 [-3.88, 3.89] 51.60 100
Diet: Control vs CRA
Diet: Control vs CRA 0.25 [-3.21, 4.60] 54.20 100
Diet: Control vs CRV
Diet: Control vs CRV 0.06 [-3.77, 4.34] 51.45 100
Diet: CR25 vs CRA
Diet: CR25 vs CRA 0.08 [-5.12, 5.67] 50.95 100
Diet: CR25 vs CRV
Diet: CR25 vs CRV -0.08 [-6.07, 5.56] 51.15 100
Diet: CRA vs CRV
Diet: CRA vs CRV -0.24 [-5.83, 4.91] 52.90 100
Sex: M vs F
Sex: M vs F 0.38 [-3.19, 4.45] 57.45 100

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F -0.11 [-3.87, 3.16] 52.65 100
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F -0.07 [-3.52, 3.49] 52.00 100
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F -0.05 [-3.31, 3.78] 50.65 100
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F 0.04 [-5.03, 4.90] 50.80 100
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F 0.08 [-4.48, 5.30] 51.00 100
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F 0.04 [-4.99, 4.98] 50.70 100

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F 0.44 [-5.86, 6.55] 56.60 100
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M -0.30 [-4.77, 4.43] 54.65 100
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F 0.53 [-5.22, 7.04] 57.20 100
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M -0.07 [-4.86, 4.92] 51.45 100
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F 0.46 [-5.52, 6.52] 55.95 100
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M -0.39 [-5.57, 4.35] 55.50 100
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F 0.62 [-5.64, 7.80] 57.10 100
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M -0.29 [-7.01, 7.08] 53.05 100
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F 0.48 [-6.48, 7.33] 54.85 100
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M -0.44 [-7.42, 7.57] 55.45 100
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F 0.07 [-6.49, 7.35] 51.10 100
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M -0.56 [-7.62, 5.82] 56.20 100

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 -0.37 [-2.65, 2.02] 63 100

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 525.87 [492.93, 553.48] 100.00 0
Session: Control, M 2 525.78 [494.27, 554.88] 100.00 0
Session: Control, M 1 - 2 -0.18 [-2.23, 1.75] 58.05 100
Session: CR25, M
Session: CR25, M 1 526.02 [492.47, 553.64] 100.00 0
Session: CR25, M 2 525.78 [492.95, 553.67] 100.00 0
Session: CR25, M 1 - 2 -0.23 [-2.89, 2.74] 55.95 100
Session: CRA, M
Session: CRA, M 1 525.57 [496.19, 557.96] 100.00 0
Session: CRA, M 2 525.22 [495.51, 557.65] 100.00 0
Session: CRA, M 1 - 2 -0.33 [-3.05, 2.31] 57.35 100
Session: CRV, M
Session: CRV, M 1 525.81 [493.34, 555.05] 100.00 0
Session: CRV, M 2 525.60 [494.24, 555.42] 100.00 0
Session: CRV, M 1 - 2 -0.29 [-3.04, 2.35] 58.90 100
Session: Control, F
Session: Control, F 1 525.72 [494.02, 555.47] 100.00 0
Session: Control, F 2 525.35 [493.41, 554.76] 100.00 0
Session: Control, F 1 - 2 -0.42 [-3.21, 2.17] 61.45 100
Session: CR25, F
Session: CR25, F 1 525.52 [493.13, 554.48] 100.00 0
Session: CR25, F 2 525.02 [493.10, 555.44] 100.00 0
Session: CR25, F 1 - 2 -0.49 [-4.50, 3.32] 59.95 100
Session: CRA, F
Session: CRA, F 1 525.47 [490.56, 553.12] 100.00 0
Session: CRA, F 2 524.81 [492.73, 556.70] 100.00 0
Session: CRA, F 1 - 2 -0.65 [-4.75, 3.01] 63.80 100
Session: CRV, F
Session: CRV, F 1 525.48 [492.96, 554.90] 100.00 0
Session: CRV, F 2 525.30 [492.69, 555.87] 100.00 0
Session: CRV, F 1 - 2 -0.52 [-4.02, 3.53] 60.30 100

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 0.04 [-2.64, 3.05] 50.80 100
Session × Diet: Control, M - CR25, M 2 0.06 [-4.19, 4.72] 51.15 100
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 0.22 [-2.67, 2.97] 55.70 100
Session × Diet: Control, M - CRA, M 2 0.35 [-4.55, 4.47] 55.75 100
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 0.08 [-2.53, 2.93] 52.90 100
Session × Diet: Control, M - CRV, M 2 0.18 [-3.89, 4.71] 53.60 100
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 0.27 [-2.53, 2.90] 57.95 100
Session × Sex: Control, M - Control, F 2 0.46 [-3.42, 5.00] 59.15 100
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 0.36 [-4.61, 5.27] 55.70 100
Session × Diet × Sex: Control, M - CR25, F 2 0.62 [-6.60, 8.71] 56.70 100
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 0.55 [-4.12, 5.55] 58.75 100
Session × Diet × Sex: Control, M - CRA, F 2 0.96 [-7.18, 8.18] 60.20 100
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 0.50 [-4.49, 5.32] 58.40 100
Session × Diet × Sex: Control, M - CRV, F 2 0.82 [-7.56, 7.60] 58.75 100
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 0.09 [-3.83, 4.07] 52.45 100
Session × Diet: CR25, M - CRA, M 2 0.20 [-6.21, 6.33] 53.00 100
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 0.04 [-3.89, 3.92] 50.50 100
Session × Diet: CR25, M - CRV, M 2 0.08 [-5.96, 6.38] 51.20 100
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 0.24 [-3.67, 3.80] 55.25 100
Session × Diet × Sex: CR25, M - Control, F 2 0.55 [-5.62, 6.24] 56.30 100
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 0.29 [-3.77, 4.12] 56.45 100
Session × Sex: CR25, M - CR25, F 2 0.64 [-5.69, 6.34] 57.50 100
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 0.48 [-4.90, 6.12] 57.15 100
Session × Diet × Sex: CR25, M - CRA, F 2 0.82 [-8.22, 9.10] 58.15 100
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 0.41 [-5.89, 5.35] 56.70 100
Session × Diet × Sex: CR25, M - CRV, F 2 0.73 [-8.74, 9.06] 55.65 100
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 -0.09 [-4.11, 3.60] 51.80 100
Session × Diet: CRA, M - CRV, M 2 -0.23 [-6.31, 6.04] 52.75 100
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 0.08 [-3.65, 3.95] 51.60 100
Session × Diet × Sex: CRA, M - Control, F 2 0.15 [-5.58, 6.52] 51.60 100
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 0.13 [-5.47, 5.58] 51.90 100
Session × Diet × Sex: CRA, M - CR25, F 2 0.29 [-8.09, 9.32] 52.65 100
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 0.38 [-3.42, 4.33] 57.30 100
Session × Sex: CRA, M - CRA, F 2 0.65 [-4.88, 7.11] 58.50 100
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 0.34 [-5.31, 5.59] 54.25 100
Session × Diet × Sex: CRA, M - CRV, F 2 0.45 [-8.25, 8.90] 54.05 100
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 0.19 [-4.25, 3.55] 53.85 100
Session × Diet × Sex: CRV, M - Control, F 2 0.35 [-5.69, 6.36] 54.40 100
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 0.31 [-5.53, 5.94] 54.90 100
Session × Diet × Sex: CRV, M - CR25, F 2 0.50 [-8.72, 9.16] 54.70 100
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 0.50 [-4.56, 6.48] 56.85 100
Session × Diet × Sex: CRV, M - CRA, F 2 0.81 [-7.88, 9.46] 57.65 100
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 0.40 [-3.51, 4.41] 57.75 100
Session × Sex: CRV, M - CRV, F 2 0.71 [-5.78, 6.75] 58.15 100
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 0.11 [-4.21, 3.85] 51.90 100
Session × Diet: Control, F - CR25, F 2 0.19 [-6.43, 6.21] 52.45 100
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 0.23 [-3.50, 4.29] 54.90 100
Session × Diet: Control, F - CRA, F 2 0.45 [-4.97, 7.36] 54.95 100
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 0.18 [-4.14, 3.85] 53.50 100
Session × Diet: Control, F - CRV, F 2 0.27 [-6.38, 6.28] 53.60 100
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 0.10 [-6.00, 5.34] 51.30 100
Session × Diet: CR25, F - CRA, F 2 0.33 [-8.10, 9.31] 53.15 100
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 0.05 [-5.91, 6.04] 50.65 100
Session × Diet: CR25, F - CRV, F 2 -0.03 [-8.75, 9.63] 50.35 100
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 -0.19 [-5.65, 5.26] 52.70 100
Session × Diet: CRA, F - CRV, F 2 -0.28 [-9.63, 7.73] 52.60 100

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 0.07 [-3.27, 3.09] 52.25 100
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 0.23 [-3.00, 3.22] 55.75 100
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 0.11 [-2.98, 3.38] 52.90 100
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 0.09 [-4.01, 4.88] 51.45 100
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 0.03 [-4.74, 4.51] 50.50 100
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 -0.14 [-4.42, 4.36] 52.10 100
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 0.09 [-4.85, 5.13] 51.60 100
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 0.41 [-4.56, 5.22] 55.90 100
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 0.19 [-5.23, 4.86] 53.10 100
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 0.21 [-6.11, 7.88] 52.80 100
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 -0.01 [-7.19, 7.11] 50.05 100
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 -0.25 [-7.34, 6.52] 52.75 100
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 0.37 [-2.32, 3.70] 59.50 100
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 0.58 [-4.20, 4.99] 60.10 100

Bar Plot

Density Plot

Resting Time by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 2,953.0 192.6 2,583.0 3,299.0 0.0
Control F 24.0 2,934.6 157.7 2,716.0 3,321.0 0.0
CR25 M 24.0 2,945.0 162.8 2,698.0 3,213.0 0.0
CR25 F 24.0 2,980.8 170.0 2,613.0 3,271.0 0.0
CRA M 20.0 3,005.2 160.6 2,737.0 3,339.0 0.0
CRA F 20.0 2,968.6 183.2 2,485.0 3,204.0 0.0
CRV M 24.0 2,978.5 116.7 2,671.0 3,182.0 0.0
CRV F 23.0 2,960.0 123.7 2,710.0 3,148.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: gaussian
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 2,964.350 11.845 2,941.222 2,987.623 Fixed Effects
DietCR25 −0.004 1.006 −1.975 1.979 Fixed Effects
DietCRA 0.039 1.001 −1.921 1.988 Fixed Effects
DietCRV 0.009 0.999 −1.937 1.958 Fixed Effects
SexF −0.018 0.996 −1.969 1.931 Fixed Effects
Session 0.254 1.000 −1.704 2.214 Fixed Effects
DietCR25:SexF 0.017 1.001 −1.953 1.973 Fixed Effects
DietCRA:SexF 0.003 0.998 −1.958 1.961 Fixed Effects
DietCRV:SexF −0.009 1.001 −1.976 1.943 Fixed Effects
DietCR25:Session 0.060 0.996 −1.893 2.012 Fixed Effects
DietCRA:Session 0.112 0.997 −1.830 2.061 Fixed Effects
DietCRV:Session 0.048 1.007 −1.926 2.030 Fixed Effects
SexF:Session 0.086 1.002 −1.875 2.058 Fixed Effects
DietCR25:SexF:Session 0.045 1.001 −1.922 2.006 Fixed Effects
DietCRA:SexF:Session 0.034 0.995 −1.915 1.979 Fixed Effects
DietCRV:SexF:Session 0.013 1.000 −1.936 1.971 Fixed Effects

Posterior Check

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Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 -0.17 [-4.18, 3.52] 53.10 100
Diet: Control vs CRA
Diet: Control vs CRA -0.20 [-4.14, 3.56] 54.30 100
Diet: Control vs CRV
Diet: Control vs CRV -0.02 [-3.73, 3.95] 50.60 100
Diet: CR25 vs CRA
Diet: CR25 vs CRA -0.10 [-5.47, 5.59] 51.50 100
Diet: CR25 vs CRV
Diet: CR25 vs CRV 0.09 [-5.07, 5.66] 51.00 100
Diet: CRA vs CRV
Diet: CRA vs CRV 0.26 [-5.06, 5.80] 53.85 100
Sex: M vs F
Sex: M vs F -0.12 [-3.82, 3.79] 52.80 100

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F 0.15 [-3.26, 3.88] 53.95 100
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F 0.00 [-3.41, 3.61] 50.20 100
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F -0.06 [-3.68, 3.33] 51.70 100
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F -0.12 [-5.02, 4.95] 51.80 100
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F -0.18 [-4.82, 5.10] 52.80 100
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F -0.07 [-4.92, 4.89] 50.95 100

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F -0.29 [-7.02, 5.20] 53.65 100
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M 0.00 [-4.59, 5.18] 50.10 100
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F -0.30 [-6.25, 5.73] 53.95 100
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M -0.14 [-5.13, 4.87] 51.85 100
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F -0.07 [-6.42, 5.58] 51.30 100
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M 0.00 [-4.89, 4.90] 50.05 100
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F -0.29 [-7.14, 6.73] 52.80 100
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M 0.02 [-6.95, 7.07] 50.20 100
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F -0.05 [-7.29, 6.39] 50.75 100
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M 0.17 [-7.07, 6.85] 51.75 100
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F 0.10 [-6.70, 7.26] 51.20 100
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M 0.29 [-6.15, 7.51] 53.30 100

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 0.38 [-2.05, 2.63] 62.25 100

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 2964.85 [2940.77, 2988.61] 100.00 0
Session: Control, M 2 2965.03 [2941.12, 2988.96] 100.00 0
Session: Control, M 1 - 2 0.24 [-1.59, 2.18] 58.80 100
Session: CR25, M
Session: CR25, M 1 2965.15 [2941.07, 2989.13] 100.00 0
Session: CR25, M 2 2965.31 [2940.77, 2989.37] 100.00 0
Session: CR25, M 1 - 2 0.30 [-2.35, 3.04] 58.30 100
Session: CRA, M
Session: CRA, M 1 2965.06 [2940.57, 2988.90] 100.00 0
Session: CRA, M 2 2965.46 [2940.24, 2988.85] 100.00 0
Session: CRA, M 1 - 2 0.35 [-2.55, 2.85] 60.45 100
Session: CRV, M
Session: CRV, M 1 2965.06 [2939.90, 2987.62] 100.00 0
Session: CRV, M 2 2965.14 [2939.05, 2987.26] 100.00 0
Session: CRV, M 1 - 2 0.24 [-2.47, 2.99] 57.25 100
Session: Control, F
Session: Control, F 1 2964.95 [2940.37, 2988.43] 100.00 0
Session: Control, F 2 2965.23 [2939.66, 2988.45] 100.00 0
Session: Control, F 1 - 2 0.36 [-2.55, 2.89] 60.70 100
Session: CR25, F
Session: CR25, F 1 2965.19 [2941.57, 2990.25] 100.00 0
Session: CR25, F 2 2965.71 [2940.98, 2991.01] 100.00 0
Session: CR25, F 1 - 2 0.43 [-3.65, 4.15] 58.25 100
Session: CRA, F
Session: CRA, F 1 2965.38 [2942.34, 2991.69] 100.00 0
Session: CRA, F 2 2965.67 [2944.12, 2994.74] 100.00 0
Session: CRA, F 1 - 2 0.52 [-3.24, 4.43] 60.35 100
Session: CRV, F
Session: CRV, F 1 2965.08 [2939.23, 2987.66] 100.00 0
Session: CRV, F 2 2965.47 [2939.85, 2989.65] 100.00 0
Session: CRV, F 1 - 2 0.42 [-3.30, 4.47] 58.50 100

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 -0.10 [-2.68, 2.84] 53.00 100.00
Session × Diet: Control, M - CR25, M 2 -0.17 [-4.29, 4.25] 52.65 100.00
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 -0.16 [-3.05, 2.26] 54.75 100.00
Session × Diet: Control, M - CRA, M 2 -0.26 [-4.84, 3.62] 54.90 100.00
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 -0.04 [-2.77, 2.73] 51.45 100.00
Session × Diet: Control, M - CRV, M 2 -0.11 [-4.13, 4.74] 51.85 100.00
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 -0.14 [-2.92, 2.62] 53.50 100.00
Session × Sex: Control, M - Control, F 2 -0.23 [-4.45, 4.24] 53.95 100.00
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 -0.26 [-5.31, 4.26] 55.15 100.00
Session × Diet × Sex: Control, M - CR25, F 2 -0.50 [-8.72, 6.46] 54.60 99.95
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 -0.37 [-4.96, 4.44] 55.85 100.00
Session × Diet × Sex: Control, M - CRA, F 2 -0.56 [-7.59, 7.14] 56.20 100.00
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 -0.24 [-5.06, 4.43] 53.50 100.00
Session × Diet × Sex: Control, M - CRV, F 2 -0.38 [-7.73, 7.34] 53.35 100.00
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 -0.10 [-3.91, 3.70] 52.25 100.00
Session × Diet: CR25, M - CRA, M 2 -0.15 [-6.00, 6.05] 52.25 100.00
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 0.00 [-3.91, 3.86] 50.05 100.00
Session × Diet: CR25, M - CRV, M 2 0.02 [-6.54, 6.01] 50.35 100.00
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 -0.04 [-3.77, 3.77] 50.70 100.00
Session × Diet × Sex: CR25, M - Control, F 2 -0.16 [-5.87, 6.13] 51.55 100.00
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 -0.21 [-3.86, 3.85] 54.60 100.00
Session × Sex: CR25, M - CR25, F 2 -0.36 [-6.27, 6.09] 54.85 100.00
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 -0.26 [-5.95, 4.72] 53.40 100.00
Session × Diet × Sex: CR25, M - CRA, F 2 -0.47 [-8.67, 8.07] 53.95 100.00
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 -0.15 [-5.79, 5.10] 52.55 100.00
Session × Diet × Sex: CR25, M - CRV, F 2 -0.24 [-9.51, 7.86] 52.00 99.95
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 0.10 [-3.60, 4.08] 51.55 100.00
Session × Diet: CRA, M - CRV, M 2 0.23 [-5.75, 6.56] 52.70 100.00
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 0.01 [-3.45, 4.08] 50.60 100.00
Session × Diet × Sex: CRA, M - Control, F 2 0.05 [-6.24, 5.92] 50.45 100.00
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 -0.12 [-5.50, 5.39] 51.45 100.00
Session × Diet × Sex: CRA, M - CR25, F 2 -0.17 [-8.86, 8.53] 51.80 99.90
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 -0.15 [-4.24, 3.50] 52.30 100.00
Session × Sex: CRA, M - CRA, F 2 -0.27 [-6.38, 5.63] 53.55 100.00
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 0.01 [-5.75, 5.49] 50.05 100.00
Session × Diet × Sex: CRA, M - CRV, F 2 0.07 [-9.45, 8.33] 50.40 99.95
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 -0.03 [-3.91, 3.79] 50.85 100.00
Session × Diet × Sex: CRV, M - Control, F 2 -0.16 [-6.23, 6.04] 52.15 100.00
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 -0.29 [-5.42, 5.60] 53.50 100.00
Session × Diet × Sex: CRV, M - CR25, F 2 -0.46 [-8.79, 8.78] 54.15 99.95
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 -0.35 [-5.60, 5.15] 54.35 100.00
Session × Diet × Sex: CRV, M - CRA, F 2 -0.56 [-9.34, 7.44] 54.55 100.00
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 -0.15 [-3.91, 3.64] 53.20 100.00
Session × Sex: CRV, M - CRV, F 2 -0.25 [-6.11, 6.14] 53.65 100.00
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 -0.15 [-4.19, 3.45] 53.40 100.00
Session × Diet: Control, F - CR25, F 2 -0.30 [-6.57, 5.83] 54.25 100.00
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 -0.22 [-4.08, 3.57] 54.70 100.00
Session × Diet: Control, F - CRA, F 2 -0.41 [-6.43, 5.51] 55.30 100.00
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 -0.16 [-3.95, 3.93] 53.30 100.00
Session × Diet: Control, F - CRV, F 2 -0.24 [-6.12, 6.65] 52.45 100.00
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 -0.11 [-5.69, 5.10] 51.30 100.00
Session × Diet: CR25, F - CRA, F 2 -0.18 [-8.78, 8.25] 51.55 100.00
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 0.06 [-5.61, 5.52] 50.90 100.00
Session × Diet: CR25, F - CRV, F 2 0.07 [-8.60, 9.42] 50.65 99.95
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 0.10 [-5.54, 5.43] 51.75 100.00
Session × Diet: CRA, F - CRV, F 2 0.30 [-8.83, 8.55] 52.75 100.00

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 -0.14 [-3.19, 2.91] 53.70 100
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 -0.20 [-3.14, 2.87] 54.45 100
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 -0.13 [-3.19, 3.08] 53.00 100
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 -0.10 [-4.45, 3.93] 51.75 100
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 0.01 [-4.46, 4.48] 50.10 100
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 0.09 [-4.38, 4.21] 51.75 100
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 -0.24 [-4.86, 4.81] 54.00 100
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 -0.33 [-5.35, 4.02] 55.40 100
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 -0.17 [-5.41, 4.71] 52.30 100
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 -0.21 [-7.13, 6.10] 52.00 100
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 0.06 [-6.97, 7.15] 50.70 100
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 0.24 [-6.17, 7.63] 52.70 100
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 -0.15 [-3.02, 3.03] 54.15 100
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 -0.32 [-4.91, 4.78] 55.60 100

Bar Plot

Density Plot

Stereotypical Time by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 509.4 155.8 228.0 809.0 0.0
Control F 24.0 459.6 114.3 176.0 648.0 0.0
CR25 M 24.0 513.1 130.6 306.0 691.0 0.0
CR25 F 24.0 420.1 116.1 228.0 699.0 0.0
CRA M 20.0 459.2 110.7 210.0 632.0 0.0
CRA F 20.0 426.3 116.3 246.0 672.0 0.0
CRV M 24.0 480.7 86.6 330.0 717.0 0.0
CRV F 23.0 429.2 89.2 309.0 621.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: gaussian
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 463.481 10.134 443.596 483.345 Fixed Effects
DietCR25 0.011 0.993 −1.950 1.946 Fixed Effects
DietCRA −0.045 1.006 −2.017 1.923 Fixed Effects
DietCRV −0.028 0.999 −1.990 1.944 Fixed Effects
SexF −0.155 1.006 −2.088 1.795 Fixed Effects
Session −0.398 0.994 −2.344 1.543 Fixed Effects
DietCR25:SexF −0.069 1.013 −2.038 1.938 Fixed Effects
DietCRA:SexF −0.050 1.022 −2.040 1.955 Fixed Effects
DietCRV:SexF −0.043 0.986 −1.985 1.894 Fixed Effects
DietCR25:Session −0.086 1.001 −2.020 1.873 Fixed Effects
DietCRA:Session −0.163 0.993 −2.098 1.816 Fixed Effects
DietCRV:Session −0.066 0.984 −1.996 1.858 Fixed Effects
SexF:Session −0.380 1.001 −2.328 1.581 Fixed Effects
DietCR25:SexF:Session −0.109 0.997 −2.053 1.866 Fixed Effects
DietCRA:SexF:Session −0.101 1.005 −2.079 1.895 Fixed Effects
DietCRV:SexF:Session −0.074 0.989 −2.023 1.858 Fixed Effects

Posterior Check

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$facet <ggproto object: Class FacetNull, Facet, gg> attach_axes: function attach_strips: function compute_layout: function draw_back: function draw_front: function draw_labels: function draw_panel_content: function draw_panels: function finish_data: function format_strip_labels: function init_gtable: function init_scales: function map_data: function params: list set_panel_size: function setup_data: function setup_panel_params: function setup_params: function shrink: TRUE train_scales: function vars: function super: <ggproto object: Class FacetNull, Facet, gg>

$plot_env <environment: 0x0000019d2b59c158>

$layout <ggproto object: Class Layout, gg> coord: NULL coord_params: list facet: NULL facet_params: list finish_data: function get_scales: function layout: NULL map_position: function panel_params: NULL panel_scales_x: NULL panel_scales_y: NULL render: function render_labels: function reset_scales: function resolve_label: function setup: function setup_panel_guides: function setup_panel_params: function train_position: function super: <ggproto object: Class Layout, gg>

\(labels\)labels$title [1] “Posterior Predictive Check”

\(labels\)x NULL

\(labels\)y NULL

\(labels\)group [1] “rep_id”

\(labels\)colour [1] “colour”

\(labels\)fill [1] “fill” attr(,“fallback”) [1] TRUE

\(labels\)weight [1] “weight” attr(,“fallback”) [1] TRUE

attr(,“class”) [1] “gg” “ggplot”

Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.22 [-3.77, 4.06] 53.50 100
Diet: Control vs CRA
Diet: Control vs CRA 0.44 [-3.37, 4.47] 57.75 100
Diet: Control vs CRV
Diet: Control vs CRV 0.17 [-3.69, 4.13] 53.65 100
Diet: CR25 vs CRA
Diet: CR25 vs CRA 0.20 [-5.48, 5.77] 51.95 100
Diet: CR25 vs CRV
Diet: CR25 vs CRV 0.01 [-5.41, 5.78] 50.05 100
Diet: CRA vs CRV
Diet: CRA vs CRV -0.15 [-5.43, 5.87] 52.20 100
Sex: M vs F
Sex: M vs F 0.85 [-3.12, 4.49] 66.20 100

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F -0.22 [-3.79, 3.21] 55.40 100
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F -0.22 [-3.77, 3.69] 56.10 100
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F -0.23 [-3.42, 3.45] 54.60 100
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F -0.06 [-5.22, 4.98] 50.85 100
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F -0.04 [-4.72, 4.97] 50.70 100
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F 0.11 [-4.39, 5.56] 51.90 100

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F 0.87 [-4.73, 7.75] 61.65 100.00
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M -0.60 [-5.45, 4.29] 59.20 100.00
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F 1.23 [-4.75, 7.42] 64.45 99.95
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M -0.41 [-5.29, 4.59] 56.05 100.00
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F 1.02 [-4.71, 7.07] 63.75 99.95
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M -0.54 [-5.58, 4.45] 58.00 100.00
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F 1.10 [-6.13, 7.86] 61.80 99.80
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M -0.74 [-7.40, 6.80] 56.60 99.70
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F 1.04 [-5.43, 8.26] 60.30 99.90
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M -0.98 [-8.27, 6.23] 59.60 100.00
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F 0.66 [-6.48, 7.30] 58.85 99.85
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M -1.06 [-8.08, 6.41] 61.65 99.80

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 -0.74 [-3.00, 1.73] 72 100

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 462.88 [442.61, 481.52] 100.00 0
Session: Control, M 2 462.58 [441.66, 480.56] 100.00 0
Session: Control, M 1 - 2 -0.40 [-2.42, 1.58] 65.75 100
Session: CR25, M
Session: CR25, M 1 462.66 [443.50, 482.31] 100.00 0
Session: CR25, M 2 462.26 [443.77, 483.07] 100.00 0
Session: CR25, M 1 - 2 -0.52 [-3.13, 2.26] 64.05 100
Session: CRA, M
Session: CRA, M 1 462.74 [442.48, 481.33] 100.00 0
Session: CRA, M 2 462.25 [442.39, 481.75] 100.00 0
Session: CRA, M 1 - 2 -0.60 [-3.45, 2.33] 66.05 100
Session: CRV, M
Session: CRV, M 1 463.00 [443.82, 482.74] 100.00 0
Session: CRV, M 2 462.27 [443.75, 482.83] 100.00 0
Session: CRV, M 1 - 2 -0.44 [-3.21, 2.28] 63.30 100
Session: Control, F
Session: Control, F 1 462.46 [442.15, 481.06] 100.00 0
Session: Control, F 2 461.58 [442.70, 481.93] 100.00 0
Session: Control, F 1 - 2 -0.81 [-3.52, 2.04] 71.00 100
Session: CR25, F
Session: CR25, F 1 461.83 [441.27, 481.39] 100.00 0
Session: CR25, F 2 460.82 [440.70, 481.65] 100.00 0
Session: CR25, F 1 - 2 -0.99 [-4.96, 2.70] 69.95 100
Session: CRA, F
Session: CRA, F 1 462.12 [442.17, 481.75] 100.00 0
Session: CRA, F 2 460.93 [439.27, 480.69] 100.00 0
Session: CRA, F 1 - 2 -1.07 [-4.85, 2.72] 69.80 100
Session: CRV, F
Session: CRV, F 1 462.33 [441.47, 480.92] 100.00 0
Session: CRV, F 2 461.28 [440.49, 481.02] 100.00 0
Session: CRV, F 1 - 2 -0.93 [-4.64, 3.18] 68.25 100

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 0.09 [-2.50, 2.93] 52.95 100.00
Session × Diet: Control, M - CR25, M 2 0.16 [-4.20, 4.56] 53.35 100.00
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 0.16 [-2.57, 2.93] 53.90 100.00
Session × Diet: Control, M - CRA, M 2 0.33 [-4.21, 4.64] 55.60 100.00
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 0.08 [-2.50, 3.03] 52.50 100.00
Session × Diet: Control, M - CRV, M 2 0.16 [-4.59, 4.23] 53.40 100.00
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 0.49 [-2.19, 3.11] 63.70 100.00
Session × Sex: Control, M - Control, F 2 0.87 [-3.22, 5.22] 65.30 100.00
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 0.84 [-3.95, 5.45] 64.90 100.00
Session × Diet × Sex: Control, M - CR25, F 2 1.51 [-5.79, 9.00] 65.65 99.65
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 0.85 [-3.82, 6.07] 63.75 100.00
Session × Diet × Sex: Control, M - CRA, F 2 1.52 [-6.26, 9.08] 66.20 99.70
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 0.73 [-4.15, 5.18] 62.00 100.00
Session × Diet × Sex: Control, M - CRV, F 2 1.30 [-5.69, 8.96] 63.15 99.75
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 0.05 [-3.66, 3.96] 51.20 100.00
Session × Diet: CR25, M - CRA, M 2 0.08 [-5.72, 6.48] 51.55 99.95
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 -0.03 [-3.88, 3.93] 50.75 100.00
Session × Diet: CR25, M - CRV, M 2 -0.13 [-6.02, 6.17] 51.80 100.00
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 0.44 [-3.72, 3.97] 57.55 100.00
Session × Diet × Sex: CR25, M - Control, F 2 0.80 [-5.56, 6.66] 59.70 100.00
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 0.77 [-2.96, 4.63] 65.30 100.00
Session × Sex: CR25, M - CR25, F 2 1.35 [-4.85, 7.22] 66.05 100.00
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 0.78 [-4.40, 6.60] 59.95 99.95
Session × Diet × Sex: CR25, M - CRA, F 2 1.36 [-6.59, 10.81] 62.05 98.85
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 0.68 [-4.95, 5.92] 58.75 100.00
Session × Diet × Sex: CR25, M - CRV, F 2 1.23 [-8.08, 8.99] 60.00 98.75
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 -0.10 [-4.40, 3.53] 51.85 100.00
Session × Diet: CRA, M - CRV, M 2 -0.21 [-6.55, 6.03] 53.00 100.00
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 0.36 [-3.25, 4.23] 55.95 100.00
Session × Diet × Sex: CRA, M - Control, F 2 0.68 [-5.36, 6.78] 57.45 99.95
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 0.69 [-4.44, 6.30] 59.30 100.00
Session × Diet × Sex: CRA, M - CR25, F 2 1.25 [-7.91, 9.39] 60.40 99.40
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 0.69 [-3.33, 4.56] 63.90 100.00
Session × Sex: CRA, M - CRA, F 2 1.20 [-5.35, 7.05] 65.20 99.95
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 0.57 [-4.95, 5.86] 57.45 100.00
Session × Diet × Sex: CRA, M - CRV, F 2 0.93 [-7.27, 10.07] 59.05 98.90
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 0.45 [-3.27, 4.34] 58.30 100.00
Session × Diet × Sex: CRV, M - Control, F 2 0.79 [-5.49, 6.32] 59.25 100.00
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 0.83 [-4.57, 6.49] 61.40 100.00
Session × Diet × Sex: CRV, M - CR25, F 2 1.45 [-7.14, 10.35] 61.85 99.00
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 0.78 [-4.79, 6.61] 60.40 100.00
Session × Diet × Sex: CRV, M - CRA, F 2 1.40 [-7.14, 10.79] 61.35 98.85
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 0.64 [-3.31, 4.34] 63.00 100.00
Session × Sex: CRV, M - CRV, F 2 1.21 [-5.15, 6.74] 64.00 100.00
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 0.25 [-3.66, 4.30] 56.10 100.00
Session × Diet: Control, F - CR25, F 2 0.48 [-5.39, 6.69] 56.50 99.95
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 0.37 [-3.70, 4.26] 57.30 100.00
Session × Diet: Control, F - CRA, F 2 0.66 [-5.35, 7.42] 59.40 100.00
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 0.20 [-3.55, 4.15] 54.05 100.00
Session × Diet: Control, F - CRV, F 2 0.36 [-5.79, 6.61] 54.85 99.95
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 0.03 [-5.62, 5.48] 50.50 100.00
Session × Diet: CR25, F - CRA, F 2 0.02 [-8.72, 9.05] 50.15 99.05
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 -0.05 [-5.42, 5.62] 50.95 100.00
Session × Diet: CR25, F - CRV, F 2 -0.16 [-8.64, 8.69] 51.80 98.90
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 -0.24 [-5.93, 5.28] 53.35 100.00
Session × Diet: CRA, F - CRV, F 2 -0.29 [-9.65, 8.33] 52.70 99.05

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 0.17 [-2.98, 3.18] 54.65 100.00
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 0.25 [-2.90, 3.36] 56.30 100.00
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 0.12 [-3.02, 3.16] 54.00 100.00
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 0.03 [-4.03, 4.74] 51.00 100.00
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 -0.04 [-4.60, 4.15] 50.75 100.00
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 -0.16 [-4.68, 4.35] 52.75 100.00
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 0.29 [-4.85, 4.85] 55.25 100.00
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 0.50 [-4.47, 5.55] 57.35 100.00
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 0.22 [-4.89, 4.94] 54.10 100.00
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 0.07 [-6.65, 7.20] 50.70 99.90
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 -0.17 [-6.72, 7.16] 52.20 99.75
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 -0.25 [-7.79, 6.51] 53.40 100.00
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 0.66 [-2.18, 3.73] 66.50 100.00
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 1.10 [-3.24, 5.88] 67.80 100.00

Bar Plot

Density Plot

Stereotypical Count by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 7,860.8 2,482.8 3,462.0 12,203.0 0.0
Control F 24.0 6,958.7 1,829.7 2,676.0 9,861.0 0.0
CR25 M 24.0 7,929.6 2,183.3 4,501.0 11,291.0 0.0
CR25 F 24.0 6,221.6 1,783.4 3,387.0 10,595.0 0.0
CRA M 20.0 7,045.9 1,923.1 2,693.0 9,485.0 0.0
CRA F 20.0 6,344.1 1,792.7 3,820.0 10,447.0 0.0
CRV M 24.0 7,391.3 1,391.0 5,071.0 11,069.0 0.0
CRV F 23.0 6,380.0 1,417.7 4,354.0 9,982.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: gaussian
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 0.181 4.537 −8.334 8.968 Fixed Effects
DietCR25 −0.001 1.002 −1.980 1.973 Fixed Effects
DietCRA −0.011 0.994 −1.966 1.934 Fixed Effects
DietCRV 0.008 1.019 −1.983 2.013 Fixed Effects
SexF 0.003 0.998 −1.943 1.943 Fixed Effects
Session −0.025 1.011 −2.012 2.002 Fixed Effects
DietCR25:SexF −0.008 1.001 −1.983 1.967 Fixed Effects
DietCRA:SexF 0.004 1.006 −1.952 1.994 Fixed Effects
DietCRV:SexF −0.008 0.994 −1.959 1.963 Fixed Effects
DietCR25:Session −0.008 1.011 −1.997 1.965 Fixed Effects
DietCRA:Session −0.009 1.015 −2.004 1.945 Fixed Effects
DietCRV:Session −0.010 0.998 −1.948 1.978 Fixed Effects
SexF:Session −0.002 1.008 −2.007 1.965 Fixed Effects
DietCR25:SexF:Session −0.011 0.984 −1.932 1.918 Fixed Effects
DietCRA:SexF:Session 0.000 1.007 −1.947 1.979 Fixed Effects
DietCRV:SexF:Session −0.001 0.995 −1.944 1.962 Fixed Effects

Posterior Check

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$layers[[2]] mapping: colour = y geom_line: na.rm = FALSE, orientation = NA, lineend = round stat_density: bw = nrd0, adjust = 1, kernel = gaussian, n = 1024, trim = FALSE, na.rm = FALSE, bounds = c(-Inf, Inf), orientation = NA position_identity

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$guides <Guides[0] ggproto object>

\(mapping\)x expr: ^.data$value env: 0x0000019d2e41bdc8

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Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.09 [-3.89, 3.71] 51.25 100
Diet: Control vs CRA
Diet: Control vs CRA -0.01 [-3.69, 4.45] 50.15 100
Diet: Control vs CRV
Diet: Control vs CRV -0.03 [-3.98, 3.81] 50.55 100
Diet: CR25 vs CRA
Diet: CR25 vs CRA -0.01 [-5.09, 5.52] 50.20 100
Diet: CR25 vs CRV
Diet: CR25 vs CRV -0.06 [-5.42, 5.23] 51.10 100
Diet: CRA vs CRV
Diet: CRA vs CRV -0.02 [-5.43, 5.37] 50.10 100
Sex: M vs F
Sex: M vs F 0.00 [-3.49, 4.15] 50.05 100

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F -0.05 [-3.28, 3.40] 51.45 100
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F 0.02 [-3.50, 3.55] 50.55 100
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F -0.01 [-3.32, 3.53] 50.30 100
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F 0.09 [-4.78, 5.21] 51.60 100
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F 0.16 [-4.81, 4.93] 52.60 100
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F -0.03 [-5.04, 4.81] 50.50 100

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F 0.09 [-5.48, 6.32] 51.40 100
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M -0.08 [-5.18, 4.87] 51.10 100
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F -0.03 [-6.24, 6.10] 50.55 100
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M 0.04 [-5.04, 5.25] 50.80 100
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F 0.09 [-5.83, 6.13] 51.20 100
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M -0.03 [-4.99, 5.03] 50.45 100
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F 0.11 [-6.79, 7.21] 51.15 100
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M -0.07 [-6.86, 6.62] 50.85 100
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F 0.16 [-7.01, 6.73] 51.90 100
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M -0.15 [-6.53, 7.13] 51.70 100
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F 0.12 [-6.85, 7.13] 51.15 100
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M -0.01 [-7.44, 6.69] 50.20 100

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 -0.09 [-2.43, 2.32] 52.2 100

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 0.28 [-7.99, 8.75] 54.10 100
Session: Control, M 2 0.23 [-7.33, 9.46] 52.95 100
Session: Control, M 1 - 2 -0.06 [-2.05, 2.03] 52.45 100
Session: CR25, M
Session: CR25, M 1 0.27 [-7.79, 9.01] 54.00 100
Session: CR25, M 2 0.29 [-8.73, 9.13] 53.40 100
Session: CR25, M 1 - 2 -0.05 [-2.68, 2.79] 51.65 100
Session: CRA, M
Session: CRA, M 1 0.19 [-7.82, 9.56] 52.95 100
Session: CRA, M 2 0.16 [-8.09, 10.40] 51.80 100
Session: CRA, M 1 - 2 -0.14 [-2.74, 2.97] 52.85 100
Session: CRV, M
Session: CRV, M 1 0.25 [-7.89, 9.21] 52.35 100
Session: CRV, M 2 0.09 [-9.01, 9.62] 51.00 100
Session: CRV, M 1 - 2 -0.08 [-2.89, 2.73] 51.90 100
Session: Control, F
Session: Control, F 1 0.22 [-7.77, 8.40] 53.25 100
Session: Control, F 2 0.16 [-7.43, 9.56] 52.10 100
Session: Control, F 1 - 2 -0.08 [-2.99, 2.60] 52.45 100
Session: CR25, F
Session: CR25, F 1 0.27 [-8.00, 9.18] 53.00 100
Session: CR25, F 2 0.11 [-9.18, 10.43] 51.00 100
Session: CR25, F 1 - 2 -0.05 [-3.70, 3.94] 51.00 100
Session: CRA, F
Session: CRA, F 1 0.29 [-8.22, 9.19] 53.40 100
Session: CRA, F 2 0.03 [-9.08, 10.79] 50.40 100
Session: CRA, F 1 - 2 -0.06 [-3.79, 3.99] 51.35 100
Session: CRV, F
Session: CRV, F 1 0.06 [-7.84, 10.03] 51.00 100
Session: CRV, F 2 0.10 [-9.60, 10.56] 50.95 100
Session: CRV, F 1 - 2 -0.12 [-4.26, 3.61] 52.35 100

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 -0.03 [-3.10, 2.47] 51.05 100
Session × Diet: Control, M - CR25, M 2 -0.03 [-4.58, 4.29] 50.30 100
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 0.03 [-3.06, 2.54] 50.55 100
Session × Diet: Control, M - CRA, M 2 0.05 [-4.38, 4.55] 50.95 100
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 0.01 [-2.63, 2.83] 50.20 100
Session × Diet: Control, M - CRV, M 2 0.01 [-3.88, 4.92] 50.40 100
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 -0.02 [-2.64, 3.05] 50.50 100
Session × Sex: Control, M - Control, F 2 -0.03 [-4.35, 4.36] 50.50 100
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 -0.03 [-4.65, 4.76] 50.40 100
Session × Diet × Sex: Control, M - CR25, F 2 -0.04 [-7.09, 7.95] 50.25 100
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 0.03 [-4.74, 4.80] 50.50 100
Session × Diet × Sex: Control, M - CRA, F 2 0.00 [-7.05, 7.91] 50.00 100
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 0.07 [-4.88, 4.56] 50.95 100
Session × Diet × Sex: Control, M - CRV, F 2 0.06 [-7.23, 7.53] 50.80 100
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 0.05 [-3.68, 3.83] 50.60 100
Session × Diet: CR25, M - CRA, M 2 0.02 [-5.84, 6.25] 50.15 100
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 0.03 [-3.93, 3.87] 50.65 100
Session × Diet: CR25, M - CRV, M 2 0.04 [-5.90, 6.38] 51.10 100
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 0.03 [-3.90, 3.94] 50.75 100
Session × Diet × Sex: CR25, M - Control, F 2 0.04 [-5.87, 6.97] 50.70 100
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 0.07 [-3.73, 4.10] 51.40 100
Session × Sex: CR25, M - CR25, F 2 0.03 [-6.29, 6.19] 50.50 100
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 0.06 [-5.09, 5.93] 51.05 100
Session × Diet × Sex: CR25, M - CRA, F 2 0.08 [-8.37, 8.81] 51.05 100
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 0.01 [-5.68, 5.32] 50.35 100
Session × Diet × Sex: CR25, M - CRV, F 2 0.20 [-8.44, 8.97] 51.35 100
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 0.00 [-4.00, 3.95] 50.10 100
Session × Diet: CRA, M - CRV, M 2 0.04 [-6.97, 5.83] 50.20 100
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 -0.04 [-3.51, 4.48] 50.85 100
Session × Diet × Sex: CRA, M - Control, F 2 -0.10 [-5.80, 6.76] 51.25 100
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 0.00 [-5.40, 5.39] 50.00 100
Session × Diet × Sex: CRA, M - CR25, F 2 -0.09 [-8.47, 8.90] 50.95 100
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 -0.05 [-4.01, 3.86] 51.40 100
Session × Sex: CRA, M - CRA, F 2 -0.01 [-5.90, 6.58] 50.20 100
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 0.03 [-5.29, 5.78] 50.30 100
Session × Diet × Sex: CRA, M - CRV, F 2 0.09 [-8.93, 8.37] 50.80 100
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 0.01 [-3.67, 4.42] 50.15 100
Session × Diet × Sex: CRV, M - Control, F 2 0.03 [-6.55, 6.12] 50.40 100
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 -0.01 [-5.54, 5.75] 50.15 100
Session × Diet × Sex: CRV, M - CR25, F 2 0.06 [-9.12, 8.58] 50.35 100
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 0.06 [-5.76, 5.49] 50.90 100
Session × Diet × Sex: CRV, M - CRA, F 2 0.05 [-8.33, 9.03] 50.25 100
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 -0.02 [-3.92, 3.79] 50.50 100
Session × Sex: CRV, M - CRV, F 2 -0.03 [-6.21, 6.15] 50.50 100
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 0.04 [-4.34, 3.58] 50.50 100
Session × Diet: Control, F - CR25, F 2 0.04 [-5.99, 6.21] 50.35 100
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 0.01 [-3.75, 3.88] 50.25 100
Session × Diet: Control, F - CRA, F 2 -0.01 [-5.61, 6.26] 50.10 100
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 0.03 [-3.90, 3.89] 50.40 100
Session × Diet: Control, F - CRV, F 2 0.14 [-6.12, 6.16] 51.90 100
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 -0.03 [-5.70, 5.21] 50.30 100
Session × Diet: CR25, F - CRA, F 2 0.04 [-8.60, 8.62] 50.35 100
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 0.01 [-5.60, 5.62] 50.10 100
Session × Diet: CR25, F - CRV, F 2 0.13 [-8.46, 9.53] 51.25 100
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 0.02 [-5.29, 5.84] 50.35 100
Session × Diet: CRA, F - CRV, F 2 0.10 [-8.73, 8.59] 50.75 100

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 0.02 [-3.31, 2.83] 50.50 100
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 0.01 [-2.97, 3.19] 50.35 100
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 0.03 [-2.82, 3.34] 50.60 100
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 -0.02 [-4.02, 4.55] 50.30 100
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 -0.02 [-4.44, 4.52] 50.15 100
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 -0.01 [-4.34, 4.64] 50.10 100
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 0.01 [-4.76, 5.03] 50.20 100
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 -0.02 [-5.08, 4.45] 50.10 100
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 0.10 [-4.81, 4.98] 51.35 100
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 0.01 [-6.74, 6.68] 50.15 100
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 0.06 [-7.01, 7.32] 50.60 100
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 0.05 [-6.86, 7.31] 50.65 100
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 0.00 [-2.78, 3.30] 50.05 100
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 0.01 [-4.92, 4.74] 50.15 100

Bar Plot

Density Plot

Vertical Count by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 1,050.0 2,471.0 55.0 8,855.0 0.0
Control F 24.0 178.8 53.3 68.0 284.0 0.0
CR25 M 24.0 809.9 2,892.4 45.0 14,234.0 0.0
CR25 F 24.0 156.8 79.2 47.0 387.0 0.0
CRA M 20.0 682.8 2,089.8 37.0 9,501.0 0.0
CRA F 20.0 141.1 49.5 62.0 255.0 0.0
CRV M 24.0 642.3 1,491.1 39.0 6,100.0 0.0
CRV F 23.0 151.9 55.7 70.0 290.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: negbinomial
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 5.697 0.182 5.331 6.054 Fixed Effects
shape_Intercept 1.579 0.859 −0.075 3.292 Fixed Effects
DietCR25 0.186 0.276 −0.341 0.733 Fixed Effects
DietCRA 0.099 0.284 −0.457 0.657 Fixed Effects
DietCRV −0.302 0.268 −0.812 0.237 Fixed Effects
SexF −0.136 0.248 −0.607 0.369 Fixed Effects
Session −0.589 0.096 −0.768 −0.389 Fixed Effects
DietCR25:SexF 0.067 0.392 −0.734 0.806 Fixed Effects
DietCRA:SexF −0.331 0.373 −1.080 0.388 Fixed Effects
DietCRV:SexF −0.005 0.366 −0.736 0.691 Fixed Effects
DietCR25:Session −0.159 0.150 −0.458 0.134 Fixed Effects
DietCRA:Session 0.042 0.149 −0.258 0.334 Fixed Effects
DietCRV:Session 0.261 0.139 −0.023 0.527 Fixed Effects
SexF:Session 0.331 0.132 0.050 0.573 Fixed Effects
DietCR25:SexF:Session −0.109 0.215 −0.515 0.332 Fixed Effects
DietCRA:SexF:Session −0.059 0.197 −0.437 0.338 Fixed Effects
DietCRV:SexF:Session −0.179 0.195 −0.540 0.223 Fixed Effects
shape_DietCR25 −0.337 0.821 −1.950 1.264 Fixed Effects
shape_DietCRA −0.201 0.828 −1.802 1.459 Fixed Effects
shape_DietCRV −0.057 0.808 −1.638 1.529 Fixed Effects
shape_SexF 0.887 0.807 −0.707 2.444 Fixed Effects
shape_Session 0.636 0.467 −0.262 1.566 Fixed Effects
shape_DietCR25:SexF −0.099 0.864 −1.778 1.621 Fixed Effects
shape_DietCRA:SexF 0.316 0.906 −1.452 2.097 Fixed Effects
shape_DietCRV:SexF 0.217 0.888 −1.510 1.966 Fixed Effects
shape_DietCR25:Session 0.424 0.648 −0.833 1.693 Fixed Effects
shape_DietCRA:Session 0.102 0.607 −1.063 1.318 Fixed Effects
shape_DietCRV:Session 0.192 0.591 −0.961 1.367 Fixed Effects
shape_SexF:Session 0.109 0.640 −1.099 1.393 Fixed Effects
shape_DietCR25:SexF:Session −0.407 0.749 −1.879 1.058 Fixed Effects
shape_DietCRA:SexF:Session 0.398 0.824 −1.165 2.049 Fixed Effects
shape_DietCRV:SexF:Session 0.116 0.809 −1.461 1.746 Fixed Effects

Posterior Check

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Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.09 [-0.09, 0.31] 82.20 47.90
Diet: Control vs CRA
Diet: Control vs CRA 0.05 [-0.16, 0.27] 69.30 57.55
Diet: Control vs CRV
Diet: Control vs CRV 0.05 [-0.15, 0.25] 68.50 60.15
Diet: CR25 vs CRA
Diet: CR25 vs CRA -0.05 [-0.26, 0.19] 65.00 56.60
Diet: CR25 vs CRV
Diet: CR25 vs CRV -0.05 [-0.25, 0.16] 68.05 59.20
Diet: CRA vs CRV
Diet: CRA vs CRV 0.00 [-0.22, 0.22] 51.30 62.15
Sex: M vs F
Sex: M vs F -0.16 [-0.30, 0.01] 97.10 18.90

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F -0.10 [-0.51, 0.32] 68.55 30.80
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F -0.42 [-0.82, 0.01] 97.70 5.55
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F -0.27 [-0.69, 0.10] 91.40 15.65
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F -0.33 [-0.75, 0.13] 92.35 12.60
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F -0.18 [-0.63, 0.22] 79.70 25.25
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F 0.15 [-0.31, 0.56] 74.50 26.95

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F -0.21 [-0.52, 0.08] 91.60 20.20
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M 0.40 [0.11, 0.67] 99.75 1.50
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F -0.10 [-0.37, 0.18] 76.40 41.30
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M 0.20 [-0.12, 0.53] 87.90 22.00
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F -0.18 [-0.44, 0.10] 89.15 27.00
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M 0.27 [-0.04, 0.53] 96.35 11.65
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F -0.15 [-0.46, 0.13] 84.00 29.30
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M 0.06 [-0.30, 0.41] 63.55 40.20
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F -0.22 [-0.49, 0.07] 93.15 18.30
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M 0.12 [-0.18, 0.42] 78.40 35.25
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F -0.02 [-0.31, 0.35] 54.50 44.25
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M 0.02 [-0.27, 0.29] 53.60 48.50

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 -0.43 [-0.50, -0.36] 100 0

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 5.10 [4.88, 5.34] 100.00 0.00
Session: Control, M 2 4.51 [4.30, 4.73] 100.00 0.00
Session: Control, M 1 - 2 -0.59 [-0.77, -0.39] 100.00 0.00
Session: CR25, M
Session: CR25, M 1 5.14 [4.89, 5.39] 100.00 0.00
Session: CR25, M 2 4.39 [4.17, 4.63] 100.00 0.00
Session: CR25, M 1 - 2 -0.75 [-0.98, -0.50] 100.00 0.00
Session: CRA, M
Session: CRA, M 1 5.25 [4.97, 5.53] 100.00 0.00
Session: CRA, M 2 4.70 [4.42, 4.97] 100.00 0.00
Session: CRA, M 1 - 2 -0.55 [-0.78, -0.32] 100.00 0.05
Session: CRV, M
Session: CRV, M 1 5.06 [4.83, 5.30] 100.00 0.00
Session: CRV, M 2 4.74 [4.52, 4.96] 100.00 0.00
Session: CRV, M 1 - 2 -0.33 [-0.54, -0.13] 99.85 1.55
Session: Control, F
Session: Control, F 1 5.31 [5.10, 5.51] 100.00 0.00
Session: Control, F 2 5.05 [4.83, 5.24] 100.00 0.00
Session: Control, F 1 - 2 -0.25 [-0.44, -0.10] 99.95 1.90
Session: CR25, F
Session: CR25, F 1 5.28 [5.04, 5.56] 100.00 0.00
Session: CR25, F 2 4.76 [4.49, 5.01] 100.00 0.00
Session: CR25, F 1 - 2 -0.53 [-0.77, -0.28] 99.85 0.20
Session: CRA, F
Session: CRA, F 1 5.05 [4.84, 5.28] 100.00 0.00
Session: CRA, F 2 4.78 [4.57, 4.97] 100.00 0.00
Session: CRA, F 1 - 2 -0.28 [-0.46, -0.10] 99.70 2.60
Session: CRV, F
Session: CRV, F 1 5.08 [4.87, 5.30] 100.00 0.00
Session: CRV, F 2 4.90 [4.69, 5.09] 100.00 0.00
Session: CRV, F 1 - 2 -0.19 [-0.37, 0.02] 94.80 18.40

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 -0.03 [-0.36, 0.29] 57.80 40.85
Session × Diet: Control, M - CR25, M 2 0.13 [-0.18, 0.47] 77.80 34.00
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 -0.16 [-0.51, 0.22] 79.90 28.85
Session × Diet: Control, M - CRA, M 2 -0.19 [-0.55, 0.15] 86.45 24.55
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 0.04 [-0.28, 0.35] 58.65 43.50
Session × Diet: Control, M - CRV, M 2 -0.23 [-0.52, 0.09] 92.50 17.45
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 -0.21 [-0.51, 0.11] 89.15 22.10
Session × Sex: Control, M - Control, F 2 -0.53 [-0.84, -0.23] 100.00 0.20
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 -0.18 [-0.55, 0.14] 85.85 24.60
Session × Diet × Sex: Control, M - CR25, F 2 -0.24 [-0.60, 0.07] 92.65 15.50
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 0.05 [-0.29, 0.36] 62.30 42.55
Session × Diet × Sex: Control, M - CRA, F 2 -0.26 [-0.57, 0.05] 95.15 11.90
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 0.03 [-0.29, 0.33] 56.90 44.15
Session × Diet × Sex: Control, M - CRV, F 2 -0.39 [-0.69, -0.10] 99.25 2.60
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 -0.12 [-0.51, 0.25] 73.05 32.10
Session × Diet: CR25, M - CRA, M 2 -0.32 [-0.66, 0.06] 95.30 9.85
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 0.07 [-0.27, 0.42] 65.10 39.65
Session × Diet: CR25, M - CRV, M 2 -0.35 [-0.67, -0.03] 98.35 6.05
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 -0.17 [-0.49, 0.17] 84.10 27.15
Session × Diet × Sex: CR25, M - Control, F 2 -0.66 [-0.96, -0.34] 100.00 0.00
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 -0.15 [-0.53, 0.19] 80.00 28.55
Session × Sex: CR25, M - CR25, F 2 -0.37 [-0.71, -0.01] 98.40 5.50
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 0.09 [-0.23, 0.44] 69.35 37.95
Session × Diet × Sex: CR25, M - CRA, F 2 -0.39 [-0.70, -0.08] 98.85 3.25
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 0.06 [-0.28, 0.38] 64.75 40.00
Session × Diet × Sex: CR25, M - CRV, F 2 -0.51 [-0.82, -0.22] 100.00 0.25
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 0.18 [-0.17, 0.59] 84.45 24.05
Session × Diet: CRA, M - CRV, M 2 -0.04 [-0.36, 0.33] 57.75 41.15
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 -0.05 [-0.39, 0.30] 60.20 39.20
Session × Diet × Sex: CRA, M - Control, F 2 -0.34 [-0.70, -0.01] 97.20 7.10
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 -0.03 [-0.41, 0.37] 57.00 38.10
Session × Diet × Sex: CRA, M - CR25, F 2 -0.06 [-0.42, 0.33] 62.90 37.20
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 0.20 [-0.17, 0.55] 86.65 23.90
Session × Sex: CRA, M - CRA, F 2 -0.07 [-0.39, 0.29] 65.90 38.80
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 0.18 [-0.20, 0.53] 84.65 25.65
Session × Diet × Sex: CRA, M - CRV, F 2 -0.20 [-0.54, 0.14] 86.95 23.15
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 -0.23 [-0.53, 0.11] 92.10 17.15
Session × Diet × Sex: CRV, M - Control, F 2 -0.31 [-0.61, -0.02] 97.90 8.40
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 -0.22 [-0.56, 0.14] 88.65 19.80
Session × Diet × Sex: CRV, M - CR25, F 2 -0.03 [-0.33, 0.34] 56.00 41.90
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 0.01 [-0.30, 0.34] 52.80 43.90
Session × Diet × Sex: CRV, M - CRA, F 2 -0.04 [-0.33, 0.27] 59.80 46.15
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 -0.01 [-0.34, 0.30] 53.00 43.60
Session × Sex: CRV, M - CRV, F 2 -0.16 [-0.44, 0.15] 86.00 28.45
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 0.02 [-0.30, 0.37] 53.70 43.45
Session × Diet: Control, F - CR25, F 2 0.29 [-0.06, 0.59] 95.90 11.85
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 0.25 [-0.04, 0.57] 94.70 13.85
Session × Diet: Control, F - CRA, F 2 0.28 [-0.04, 0.54] 96.45 12.20
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 0.23 [-0.07, 0.52] 93.30 17.60
Session × Diet: Control, F - CRV, F 2 0.15 [-0.17, 0.42] 82.45 31.55
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 0.23 [-0.11, 0.56] 91.45 18.80
Session × Diet: CR25, F - CRA, F 2 -0.01 [-0.33, 0.31] 52.40 44.10
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 0.21 [-0.12, 0.56] 89.50 21.10
Session × Diet: CR25, F - CRV, F 2 -0.14 [-0.49, 0.16] 79.20 33.25
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 -0.02 [-0.32, 0.28] 55.60 46.25
Session × Diet: CRA, F - CRV, F 2 -0.12 [-0.44, 0.14] 80.55 36.05

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 -0.01 [-0.24, 0.22] 52.40 56.05
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 0.05 [-0.19, 0.28] 66.80 54.25
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 0.13 [-0.10, 0.34] 87.85 35.45
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 0.06 [-0.21, 0.31] 69.05 49.80
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 0.14 [-0.12, 0.36] 87.00 32.10
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 0.08 [-0.15, 0.32] 73.75 48.00
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 0.20 [-0.02, 0.43] 96.75 17.15
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 0.04 [-0.21, 0.25] 63.80 54.95
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 -0.04 [-0.26, 0.14] 64.25 59.55
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 -0.16 [-0.41, 0.08] 90.90 27.05
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 -0.24 [-0.47, -0.02] 98.65 10.60
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 -0.08 [-0.31, 0.14] 76.10 48.10
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 -0.04 [-0.21, 0.14] 68.50 67.80
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 -0.29 [-0.43, -0.12] 99.90 1.15

Bar Plot

Density Plot

Vertical Time by Grouping Variables
Diet Sex n Mean SD Min Max % of Zeros Zero Flag
Control M 24.0 548.0 973.9 90.0 3,541.0 0.0
Control F 24.0 154.2 47.2 57.0 234.0 0.0
CR25 M 24.0 488.9 960.5 49.0 3,524.0 0.0
CR25 F 24.0 139.6 64.9 40.0 314.0 0.0
CRA M 20.0 700.6 1,233.9 60.0 3,564.0 0.0
CRA F 20.0 116.8 37.5 48.0 180.0 0.0
CRV M 24.0 576.8 1,062.6 67.0 3,556.0 0.0
CRV F 23.0 147.4 56.7 67.0 293.0 0.0
Warning symbols: * = >40% zeros in this group, ! = >20% zeros in entire sample Either flag triggers the use of a binary choice model.

Summary Table

Model Summary
Family: negbinomial
Parameter Estimate Std. Error 2.5% CI 97.5% CI Type
Fixed Effects
Intercept 5.824 0.193 5.439 6.202 Fixed Effects
shape_Intercept 3.719 0.867 2.087 5.473 Fixed Effects
DietCR25 0.126 0.256 −0.381 0.630 Fixed Effects
DietCRA −0.023 0.286 −0.588 0.545 Fixed Effects
DietCRV −0.306 0.250 −0.793 0.186 Fixed Effects
SexF −0.412 0.259 −0.927 0.094 Fixed Effects
Session −0.436 0.119 −0.663 −0.189 Fixed Effects
DietCR25:SexF −0.003 0.353 −0.697 0.695 Fixed Effects
DietCRA:SexF −0.257 0.360 −0.963 0.455 Fixed Effects
DietCRV:SexF −0.140 0.350 −0.818 0.556 Fixed Effects
DietCR25:Session −0.166 0.157 −0.476 0.148 Fixed Effects
DietCRA:Session 0.055 0.176 −0.297 0.397 Fixed Effects
DietCRV:Session 0.240 0.148 −0.056 0.535 Fixed Effects
SexF:Session 0.186 0.160 −0.127 0.501 Fixed Effects
DietCR25:SexF:Session −0.041 0.216 −0.474 0.382 Fixed Effects
DietCRA:SexF:Session −0.080 0.220 −0.514 0.356 Fixed Effects
DietCRV:SexF:Session 0.000 0.209 −0.415 0.411 Fixed Effects
shape_DietCR25 −0.093 0.825 −1.708 1.538 Fixed Effects
shape_DietCRA 0.007 0.828 −1.618 1.625 Fixed Effects
shape_DietCRV 0.086 0.821 −1.521 1.696 Fixed Effects
shape_SexF 0.607 0.820 −0.986 2.220 Fixed Effects
shape_Session −0.830 0.464 −1.744 0.071 Fixed Effects
shape_DietCR25:SexF −0.017 0.884 −1.753 1.722 Fixed Effects
shape_DietCRA:SexF 0.530 0.916 −1.274 2.311 Fixed Effects
shape_DietCRV:SexF 0.016 0.910 −1.767 1.800 Fixed Effects
shape_DietCR25:Session 0.042 0.574 −1.051 1.173 Fixed Effects
shape_DietCRA:Session −0.133 0.570 −1.236 0.991 Fixed Effects
shape_DietCRV:Session 0.026 0.568 −1.082 1.135 Fixed Effects
shape_SexF:Session 0.355 0.585 −0.776 1.517 Fixed Effects
shape_DietCR25:SexF:Session −0.096 0.717 −1.475 1.325 Fixed Effects
shape_DietCRA:SexF:Session 0.626 0.800 −0.900 2.244 Fixed Effects
shape_DietCRV:SexF:Session 0.194 0.747 −1.260 1.676 Fixed Effects

Posterior Check

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Convergence

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25
Diet: Control vs CR25 0.15 [-0.08, 0.35] 91.25 26.80
Diet: Control vs CRA
Diet: Control vs CRA 0.13 [-0.08, 0.35] 88.05 32.40
Diet: Control vs CRV
Diet: Control vs CRV 0.02 [-0.18, 0.23] 56.20 57.60
Diet: CR25 vs CRA
Diet: CR25 vs CRA -0.02 [-0.27, 0.19] 57.75 52.55
Diet: CR25 vs CRV
Diet: CR25 vs CRV -0.14 [-0.35, 0.08] 89.10 30.15
Diet: CRA vs CRV
Diet: CRA vs CRV -0.11 [-0.34, 0.10] 82.90 39.85
Sex: M vs F
Sex: M vs F 0.28 [0.11, 0.44] 100.00 0.55

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F
Diet × Sex: Diet: Control vs CR25 × Sex: M vs F -0.07 [-0.53, 0.32] 62.00 31.10
Diet × Sex: Diet: Control vs CRA × Sex: M vs F
Diet × Sex: Diet: Control vs CRA × Sex: M vs F -0.38 [-0.82, 0.08] 95.50 7.25
Diet × Sex: Diet: Control vs CRV × Sex: M vs F
Diet × Sex: Diet: Control vs CRV × Sex: M vs F -0.14 [-0.54, 0.27] 73.90 26.15
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRA × Sex: M vs F -0.31 [-0.76, 0.16] 91.20 11.65
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F
Diet × Sex: Diet: CR25 vs CRV × Sex: M vs F -0.07 [-0.55, 0.30] 62.20 31.40
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F
Diet × Sex: Diet: CRA vs CRV × Sex: M vs F 0.24 [-0.19, 0.73] 87.05 15.35

Effect Median [95% HDI] Direction Prob. ROPE %
Diet × Sex: Control M vs CR25 F
Diet × Sex: Control M vs CR25 F 0.32 [0.02, 0.62] 98.55 4.70
Diet × Sex: Control F vs CR25 M
Diet × Sex: Control F vs CR25 M -0.02 [-0.33, 0.28] 53.50 42.60
Diet × Sex: Control M vs CRA F
Diet × Sex: Control M vs CRA F 0.45 [0.17, 0.76] 100.00 0.70
Diet × Sex: Control F vs CRA M
Diet × Sex: Control F vs CRA M -0.20 [-0.53, 0.13] 88.30 20.50
Diet × Sex: Control M vs CRV F
Diet × Sex: Control M vs CRV F 0.22 [-0.07, 0.52] 93.15 17.10
Diet × Sex: Control F vs CRV M
Diet × Sex: Control F vs CRV M -0.19 [-0.47, 0.12] 89.35 21.95
Diet × Sex: CR25 M vs CRA F
Diet × Sex: CR25 M vs CRA F 0.33 [0.06, 0.67] 98.75 4.80
Diet × Sex: CR25 F vs CRA M
Diet × Sex: CR25 F vs CRA M -0.39 [-0.71, -0.03] 98.75 3.70
Diet × Sex: CR25 M vs CRV F
Diet × Sex: CR25 M vs CRV F 0.11 [-0.21, 0.42] 75.15 34.70
Diet × Sex: CR25 F vs CRV M
Diet × Sex: CR25 F vs CRV M -0.37 [-0.64, -0.04] 99.20 3.65
Diet × Sex: CRA M vs CRV F
Diet × Sex: CRA M vs CRV F 0.29 [-0.05, 0.62] 95.35 10.90
Diet × Sex: CRA F vs CRV M
Diet × Sex: CRA F vs CRV M -0.50 [-0.79, -0.19] 100.00 0.10

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Overall Change
Session: Overall Change 1 - 2 -0.33 [-0.41, -0.26] 100 0

Effect Median [95% HDI] Direction Prob. ROPE %
Session: Control, M
Session: Control, M 1 5.39 [5.18, 5.63] 100.00 0.00
Session: Control, M 2 4.95 [4.70, 5.22] 100.00 0.00
Session: Control, M 1 - 2 -0.44 [-0.66, -0.20] 99.90 0.50
Session: CR25, M
Session: CR25, M 1 5.35 [5.13, 5.56] 100.00 0.00
Session: CR25, M 2 4.74 [4.44, 5.01] 100.00 0.00
Session: CR25, M 1 - 2 -0.60 [-0.82, -0.41] 99.95 0.15
Session: CRA, M
Session: CRA, M 1 5.41 [5.17, 5.71] 100.00 0.00
Session: CRA, M 2 5.03 [4.69, 5.32] 100.00 0.00
Session: CRA, M 1 - 2 -0.38 [-0.63, -0.12] 99.60 1.25
Session: CRV, M
Session: CRV, M 1 5.31 [5.10, 5.54] 100.00 0.00
Session: CRV, M 2 5.12 [4.89, 5.37] 100.00 0.00
Session: CRV, M 1 - 2 -0.20 [-0.37, -0.02] 97.85 10.80
Session: Control, F
Session: Control, F 1 5.16 [4.96, 5.36] 100.00 0.00
Session: Control, F 2 4.91 [4.67, 5.13] 100.00 0.00
Session: Control, F 1 - 2 -0.25 [-0.46, -0.03] 98.65 7.95
Session: CR25, F
Session: CR25, F 1 5.08 [4.86, 5.30] 100.00 0.00
Session: CR25, F 2 4.62 [4.37, 4.87] 100.00 0.00
Session: CR25, F 1 - 2 -0.46 [-0.66, -0.24] 99.85 0.20
Session: CRA, F
Session: CRA, F 1 4.86 [4.65, 5.05] 100.00 0.00
Session: CRA, F 2 4.58 [4.37, 4.79] 100.00 0.00
Session: CRA, F 1 - 2 -0.27 [-0.42, -0.12] 99.80 1.00
Session: CRV, F
Session: CRV, F 1 4.96 [4.74, 5.21] 100.00 0.00
Session: CRV, F 2 4.94 [4.69, 5.18] 100.00 0.00
Session: CRV, F 1 - 2 -0.02 [-0.23, 0.18] 56.40 58.65

Effect Median [95% HDI] Direction Prob. ROPE %
Session × Diet: Control, M - CR25, M
Session × Diet: Control, M - CR25, M 1 0.04 [-0.27, 0.36] 59.70 40.45
Session × Diet: Control, M - CR25, M 2 0.20 [-0.20, 0.55] 86.20 21.35
Session × Diet: Control, M - CRA, M
Session × Diet: Control, M - CRA, M 1 -0.02 [-0.38, 0.31] 55.85 39.25
Session × Diet: Control, M - CRA, M 2 -0.08 [-0.46, 0.35] 65.85 31.05
Session × Diet: Control, M - CRV, M
Session × Diet: Control, M - CRV, M 1 0.06 [-0.24, 0.38] 66.10 40.20
Session × Diet: Control, M - CRV, M 2 -0.18 [-0.55, 0.20] 82.40 23.40
Session × Sex: Control, M - Control, F
Session × Sex: Control, M - Control, F 1 0.23 [-0.05, 0.53] 93.85 16.85
Session × Sex: Control, M - Control, F 2 0.04 [-0.31, 0.38] 59.95 38.45
Session × Diet × Sex: Control, M - CR25, F
Session × Diet × Sex: Control, M - CR25, F 1 0.31 [0.02, 0.65] 97.75 7.25
Session × Diet × Sex: Control, M - CR25, F 2 0.33 [-0.03, 0.69] 97.00 8.10
Session × Diet × Sex: Control, M - CRA, F
Session × Diet × Sex: Control, M - CRA, F 1 0.53 [0.23, 0.84] 100.00 0.25
Session × Diet × Sex: Control, M - CRA, F 2 0.37 [0.05, 0.70] 98.95 3.35
Session × Diet × Sex: Control, M - CRV, F
Session × Diet × Sex: Control, M - CRV, F 1 0.43 [0.12, 0.74] 99.70 1.35
Session × Diet × Sex: Control, M - CRV, F 2 0.01 [-0.34, 0.37] 51.60 36.20
Session × Diet: CR25, M - CRA, M
Session × Diet: CR25, M - CRA, M 1 -0.06 [-0.42, 0.27] 65.40 38.85
Session × Diet: CR25, M - CRA, M 2 -0.28 [-0.70, 0.10] 91.65 14.40
Session × Diet: CR25, M - CRV, M
Session × Diet: CR25, M - CRV, M 1 0.03 [-0.28, 0.35] 56.40 41.55
Session × Diet: CR25, M - CRV, M 2 -0.38 [-0.74, -0.01] 97.20 4.75
Session × Diet × Sex: CR25, M - Control, F
Session × Diet × Sex: CR25, M - Control, F 1 0.19 [-0.13, 0.49] 88.95 21.80
Session × Diet × Sex: CR25, M - Control, F 2 -0.16 [-0.51, 0.20] 82.25 24.75
Session × Sex: CR25, M - CR25, F
Session × Sex: CR25, M - CR25, F 1 0.27 [-0.07, 0.56] 95.20 11.90
Session × Sex: CR25, M - CR25, F 2 0.12 [-0.24, 0.50] 74.85 29.75
Session × Diet × Sex: CR25, M - CRA, F
Session × Diet × Sex: CR25, M - CRA, F 1 0.49 [0.20, 0.80] 99.95 0.35
Session × Diet × Sex: CR25, M - CRA, F 2 0.17 [-0.15, 0.52] 82.35 25.05
Session × Diet × Sex: CR25, M - CRV, F
Session × Diet × Sex: CR25, M - CRV, F 1 0.39 [0.09, 0.73] 99.35 3.25
Session × Diet × Sex: CR25, M - CRV, F 2 -0.20 [-0.57, 0.16] 84.90 22.25
Session × Diet: CRA, M - CRV, M
Session × Diet: CRA, M - CRV, M 1 0.10 [-0.28, 0.43] 70.20 32.40
Session × Diet: CRA, M - CRV, M 2 -0.09 [-0.45, 0.34] 67.65 31.65
Session × Diet × Sex: CRA, M - Control, F
Session × Diet × Sex: CRA, M - Control, F 1 0.25 [-0.06, 0.60] 93.50 14.40
Session × Diet × Sex: CRA, M - Control, F 2 0.12 [-0.28, 0.48] 73.90 28.85
Session × Diet × Sex: CRA, M - CR25, F
Session × Diet × Sex: CRA, M - CR25, F 1 0.34 [0.01, 0.68] 97.75 7.05
Session × Diet × Sex: CRA, M - CR25, F 2 0.41 [0.02, 0.82] 98.30 5.30
Session × Sex: CRA, M - CRA, F
Session × Sex: CRA, M - CRA, F 1 0.56 [0.24, 0.89] 100.00 0.25
Session × Sex: CRA, M - CRA, F 2 0.45 [0.08, 0.85] 99.15 2.10
Session × Diet × Sex: CRA, M - CRV, F
Session × Diet × Sex: CRA, M - CRV, F 1 0.45 [0.12, 0.80] 99.70 1.20
Session × Diet × Sex: CRA, M - CRV, F 2 0.09 [-0.30, 0.48] 67.00 31.60
Session × Diet × Sex: CRV, M - Control, F
Session × Diet × Sex: CRV, M - Control, F 1 0.16 [-0.15, 0.44] 85.85 27.05
Session × Diet × Sex: CRV, M - Control, F 2 0.22 [-0.13, 0.54] 89.40 20.30
Session × Diet × Sex: CRV, M - CR25, F
Session × Diet × Sex: CRV, M - CR25, F 1 0.24 [-0.09, 0.54] 93.85 14.65
Session × Diet × Sex: CRV, M - CR25, F 2 0.50 [0.15, 0.85] 99.75 0.85
Session × Diet × Sex: CRV, M - CRA, F
Session × Diet × Sex: CRV, M - CRA, F 1 0.46 [0.15, 0.75] 99.85 0.90
Session × Diet × Sex: CRV, M - CRA, F 2 0.54 [0.23, 0.87] 100.00 0.15
Session × Sex: CRV, M - CRV, F
Session × Sex: CRV, M - CRV, F 1 0.36 [0.04, 0.67] 98.50 3.80
Session × Sex: CRV, M - CRV, F 2 0.18 [-0.16, 0.52] 84.70 23.90
Session × Diet: Control, F - CR25, F
Session × Diet: Control, F - CR25, F 1 0.08 [-0.23, 0.37] 72.35 39.20
Session × Diet: Control, F - CR25, F 2 0.29 [-0.05, 0.63] 95.45 10.25
Session × Diet: Control, F - CRA, F
Session × Diet: Control, F - CRA, F 1 0.31 [0.04, 0.60] 98.20 6.70
Session × Diet: Control, F - CRA, F 2 0.33 [0.03, 0.65] 98.05 6.05
Session × Diet: Control, F - CRV, F
Session × Diet: Control, F - CRV, F 1 0.20 [-0.09, 0.50] 90.75 19.95
Session × Diet: Control, F - CRV, F 2 -0.03 [-0.37, 0.29] 56.95 37.10
Session × Diet: CR25, F - CRA, F
Session × Diet: CR25, F - CRA, F 1 0.22 [-0.05, 0.54] 92.85 16.45
Session × Diet: CR25, F - CRA, F 2 0.04 [-0.27, 0.36] 60.55 39.05
Session × Diet: CR25, F - CRV, F
Session × Diet: CR25, F - CRV, F 1 0.12 [-0.20, 0.43] 77.30 32.75
Session × Diet: CR25, F - CRV, F 2 -0.32 [-0.68, 0.03] 96.75 7.40
Session × Diet: CRA, F - CRV, F
Session × Diet: CRA, F - CRV, F 1 -0.10 [-0.41, 0.18] 75.05 35.15
Session × Diet: CRA, F - CRV, F 2 -0.37 [-0.68, -0.05] 98.75 4.25

Effect Median [95% HDI] Direction Prob. ROPE %
Diet: Control vs CR25 | Session = 1 | averaged over Sex
Diet: Control vs CR25 | Session = 1 | averaged over Sex 1 0.06 [-0.16, 0.28] 71.30 50.80
Diet: Control vs CRA | Session = 1 | averaged over Sex
Diet: Control vs CRA | Session = 1 | averaged over Sex 1 0.14 [-0.08, 0.38] 88.15 31.25
Diet: Control vs CRV | Session = 1 | averaged over Sex
Diet: Control vs CRV | Session = 1 | averaged over Sex 1 0.14 [-0.08, 0.36] 89.00 30.15
Diet: CR25 vs CRA | Session = 1 | averaged over Sex
Diet: CR25 vs CRA | Session = 1 | averaged over Sex 1 0.08 [-0.16, 0.29] 74.10 45.85
Diet: CR25 vs CRV | Session = 1 | averaged over Sex
Diet: CR25 vs CRV | Session = 1 | averaged over Sex 1 0.07 [-0.14, 0.31] 75.25 47.55
Diet: CRA vs CRV | Session = 1 | averaged over Sex
Diet: CRA vs CRV | Session = 1 | averaged over Sex 1 0.00 [-0.24, 0.21] 51.20 53.70
Diet: Control vs CR25 | Session = 2 | averaged over Sex
Diet: Control vs CR25 | Session = 2 | averaged over Sex 2 0.25 [0.00, 0.51] 97.05 10.50
Diet: Control vs CRA | Session = 2 | averaged over Sex
Diet: Control vs CRA | Session = 2 | averaged over Sex 2 0.13 [-0.12, 0.39] 82.15 33.90
Diet: Control vs CRV | Session = 2 | averaged over Sex
Diet: Control vs CRV | Session = 2 | averaged over Sex 2 -0.10 [-0.35, 0.16] 79.70 38.15
Diet: CR25 vs CRA | Session = 2 | averaged over Sex
Diet: CR25 vs CRA | Session = 2 | averaged over Sex 2 -0.12 [-0.38, 0.15] 81.35 33.85
Diet: CR25 vs CRV | Session = 2 | averaged over Sex
Diet: CR25 vs CRV | Session = 2 | averaged over Sex 2 -0.35 [-0.60, -0.09] 99.45 2.45
Diet: CRA vs CRV | Session = 2 | averaged over Sex
Diet: CRA vs CRV | Session = 2 | averaged over Sex 2 -0.23 [-0.46, 0.06] 95.75 13.15
Sex: M vs F | Session = 1 | averaged over Diet
Sex: M vs F | Session = 1 | averaged over Diet 1 0.36 [0.19, 0.51] 100.00 0.05
Sex: M vs F | Session = 2 | averaged over Diet
Sex: M vs F | Session = 2 | averaged over Diet 2 0.20 [0.02, 0.39] 98.45 10.95

End of Document